2wfh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:28, 21 November 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 3: Line 3:
<StructureSection load='2wfh' size='340' side='right'caption='[[2wfh]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='2wfh' size='340' side='right'caption='[[2wfh]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2wfh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WFH FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2wfh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WFH FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2v9t|2v9t]], [[2v9s|2v9s]], [[2v70|2v70]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wfh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wfh OCA], [https://pdbe.org/2wfh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wfh RCSB], [https://www.ebi.ac.uk/pdbsum/2wfh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wfh ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wfh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wfh OCA], [https://pdbe.org/2wfh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wfh RCSB], [https://www.ebi.ac.uk/pdbsum/2wfh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wfh ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SLIT2_HUMAN SLIT2_HUMAN] Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.<ref>PMID:10102268</ref> <ref>PMID:10975526</ref> <ref>PMID:10864954</ref> <ref>PMID:11309622</ref> <ref>PMID:11404413</ref> <ref>PMID:11239147</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 13: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/2wfh_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/2wfh_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bastmeyer, M]]
+
[[Category: Bastmeyer M]]
-
[[Category: Cusack, S]]
+
[[Category: Cusack S]]
-
[[Category: Fritz, M]]
+
[[Category: Fritz M]]
-
[[Category: Hemrika, W]]
+
[[Category: Hemrika W]]
-
[[Category: Henry, M]]
+
[[Category: Henry M]]
-
[[Category: Jamin, M]]
+
[[Category: Jamin M]]
-
[[Category: Lortat-Jacob, H]]
+
[[Category: Lortat-Jacob H]]
-
[[Category: McCarthy, A A]]
+
[[Category: McCarthy AA]]
-
[[Category: Philipsborn, A C.von]]
+
[[Category: Seiradake E]]
-
[[Category: Seiradake, E]]
+
[[Category: Von Philipsborn AC]]
-
[[Category: Axon]]
+
-
[[Category: Chemotaxis]]
+
-
[[Category: D4]]
+
-
[[Category: Developmental protein]]
+
-
[[Category: Differentiation]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Egf-like domain]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Guidance]]
+
-
[[Category: Heparan]]
+
-
[[Category: Heparin]]
+
-
[[Category: Id14-eh4]]
+
-
[[Category: Leucine-rich repeat]]
+
-
[[Category: Lrr]]
+
-
[[Category: Midline]]
+
-
[[Category: Nerve cell]]
+
-
[[Category: Neurogenesis]]
+
-
[[Category: Neuron]]
+
-
[[Category: Phaser]]
+
-
[[Category: Roundabout]]
+
-
[[Category: Secreted]]
+
-
[[Category: Slit]]
+
-
[[Category: Splicing]]
+
-
[[Category: Sulfate]]
+
-
[[Category: Xd]]
+

Current revision

The Human Slit 2 Dimerization Domain D4

PDB ID 2wfh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools