This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1fnz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:23, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fnz.gif|left|200px]]
 
-
<!--
+
==A bark lectin from robinia pseudoacacia in complex with N-acetylgalactosamine==
-
The line below this paragraph, containing "STRUCTURE_1fnz", creates the "Structure Box" on the page.
+
<StructureSection load='1fnz' size='340' side='right'caption='[[1fnz]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1fnz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Robinia_pseudoacacia Robinia pseudoacacia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FNZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_1fnz| PDB=1fnz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fnz OCA], [https://pdbe.org/1fnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fnz RCSB], [https://www.ebi.ac.uk/pdbsum/1fnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fnz ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LCB1_ROBPS LCB1_ROBPS]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/1fnz_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fnz ConSurf].
 +
<div style="clear:both"></div>
-
'''A bark lectin from robinia pseudoacacia in complex with N-acetylgalactosamine'''
+
==See Also==
-
 
+
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
The structure of the bark lectin RPbAI (isoform A4) from Robinia pseudoacacia has been determined by protein crystallography both in the free form and complexed with N-acetylgalactosamine. The free form is refined at 1.80 A resolution to an R-factor of 18.9% whereas the complexed structure has an R-factor of 19.7% at 2.05 A resolution. Both structures are compared to each other and to other available legume lectin structures. The polypeptide chains of the two structures exhibit the characteristic legume lectin tertiary fold. The quaternary structure resembles that of the Phaseolus vulgaris lectin, the soybean agglutinin, and the Dolichos biflorus lectin, but displays some unique features leading to the extreme stability of this lectin.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1FNZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Robinia_pseudoacacia Robinia pseudoacacia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNZ OCA].
+
-
 
+
-
==Reference==
+
-
Structure of a legume lectin from the bark of Robinia pseudoacacia and its complex with N-acetylgalactosamine., Rabijns A, Verboven C, Rouge P, Barre A, Van Damme EJ, Peumans WJ, De Ranter CJ, Proteins. 2001 Sep 1;44(4):470-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11484224 11484224]
+
[[Category: Robinia pseudoacacia]]
[[Category: Robinia pseudoacacia]]
-
[[Category: Single protein]]
+
[[Category: Barre A]]
-
[[Category: Barre, A.]]
+
[[Category: De Ranter CJ]]
-
[[Category: Damme, E J.Van.]]
+
[[Category: Peumans WJ]]
-
[[Category: Peumans, W J.]]
+
[[Category: Rabijns A]]
-
[[Category: Rabijns, A.]]
+
[[Category: Rouge P]]
-
[[Category: Ranter, C J.De.]]
+
[[Category: Van Damme EJ]]
-
[[Category: Rouge, P.]]
+
[[Category: Verboven C]]
-
[[Category: Verboven, C.]]
+
-
[[Category: Jelly roll]]
+
-
[[Category: Sugar binding protein]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 16:33:21 2008''
+

Current revision

A bark lectin from robinia pseudoacacia in complex with N-acetylgalactosamine

PDB ID 1fnz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1fnz"
Personal tools