2zcm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:09, 23 October 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2zcm' size='340' side='right'caption='[[2zcm]], [[Resolution|resolution]] 1.33&Aring;' scene=''>
<StructureSection load='2zcm' size='340' side='right'caption='[[2zcm]], [[Resolution|resolution]] 1.33&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2zcm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staeq Staeq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZCM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2zcm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_RP62A Staphylococcus epidermidis RP62A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZCM FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.33&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2zcn|2zcn]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IcaR ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176279 STAEQ])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zcm OCA], [https://pdbe.org/2zcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zcm RCSB], [https://www.ebi.ac.uk/pdbsum/2zcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zcm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zcm OCA], [https://pdbe.org/2zcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zcm RCSB], [https://www.ebi.ac.uk/pdbsum/2zcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zcm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/ICAR_STAEQ ICAR_STAEQ]] Represses transcription of the icaADBC operon necessary for biofilm production.<ref>PMID:12142410</ref>
+
[https://www.uniprot.org/uniprot/ICAR_STAEQ ICAR_STAEQ] Represses transcription of the icaADBC operon necessary for biofilm production.<ref>PMID:12142410</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zc/2zcm_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zc/2zcm_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 35: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Staeq]]
+
[[Category: Staphylococcus epidermidis RP62A]]
-
[[Category: Guo, R T]]
+
[[Category: Guo RT]]
-
[[Category: Jeng, W Y]]
+
[[Category: Jeng WY]]
-
[[Category: Ko, T P]]
+
[[Category: Ko TP]]
-
[[Category: Liu, C I]]
+
[[Category: Liu CI]]
-
[[Category: Shr, H L]]
+
[[Category: Shr HL]]
-
[[Category: Wang, A H.J]]
+
[[Category: Wang AHJ]]
-
[[Category: Biofilm]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Helix-turn-helix]]
+
-
[[Category: Repressor]]
+
-
[[Category: Tetr family]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Crystal structure of IcaR, a repressor of the TetR family

PDB ID 2zcm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools