3fm6

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Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii

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@@ Line 3: / Line 3: @@
 <StructureSection load='3fm6' size='340' side='right'caption='[[3fm6]], [[Resolution|resolution]] 1.13&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3fm6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Boletus_of_the_steppes Boletus of the steppes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FM6 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3fm6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pleurotus_eryngii Pleurotus eryngii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FM6 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.13&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2boq|2boq]], [[3fjw|3fjw]], [[3fkg|3fkg]], [[3fm1|3fm1]], [[3fm4|3fm4]], [[3fmu|3fmu]]</div></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">vpl2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5323 Boletus of the steppes])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Versatile_peroxidase Versatile peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.16 1.11.1.16] </span></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fm6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fm6 OCA], [https://pdbe.org/3fm6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fm6 RCSB], [https://www.ebi.ac.uk/pdbsum/3fm6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fm6 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/VPL2_PLEER VPL2_PLEER]] A versatile ligninolytic peroxidase that combines the substrate specificity characteristics of the two other ligninolytic peroxidases, manganese peroxidase and lignin peroxidase.<ref>PMID:9987124</ref>
+[https://www.uniprot.org/uniprot/VPL2_PLEER VPL2_PLEER] A versatile ligninolytic peroxidase that combines the substrate specificity characteristics of the two other ligninolytic peroxidases, manganese peroxidase and lignin peroxidase.<ref>PMID:9987124</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 17: / Line 15: @@
   <jmolCheckbox>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/3fm6_consurf.spt"</scriptWhenChecked>
-    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
@@ Line 26: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Boletus of the steppes]]
 [[Category: Large Structures]]
-[[Category: Versatile peroxidase]]
+[[Category: Pleurotus eryngii]]
-[[Category: Choinowski, T]]
+[[Category: Choinowski T]]
-[[Category: Martinez, A T]]
+[[Category: Martinez AT]]
-[[Category: Piontek, K]]
+[[Category: Piontek K]]
-[[Category: Plattner, D A]]
+[[Category: Plattner DA]]
-[[Category: Electron transfer]]
-[[Category: Heme]]
-[[Category: Hydrogen peroxide]]
-[[Category: Iron]]
-[[Category: Lignin degradation]]
-[[Category: Lignin peroxidase]]
-[[Category: Manganese]]
-[[Category: Manganese peroxidase]]
-[[Category: Metal-binding]]
-[[Category: Mn-independent oxidation phenolic non-phenolic aromatic]]
-[[Category: Mnii oxidation]]
-[[Category: Oxidoreductase]]
-[[Category: Peroxidase]]
-[[Category: Polyvalent peroxidase]]
-[[Category: Protoporphyrin ix]]
-[[Category: Secreted]]
-[[Category: Zymogen]]

3fm6

From Proteopedia

Current revision

Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii

Structural highlights

Function

Evolutionary Conservation

References

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