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| <StructureSection load='3l01' size='340' side='right'caption='[[3l01]], [[Resolution|resolution]] 2.60Å' scene=''> | | <StructureSection load='3l01' size='340' side='right'caption='[[3l01]], [[Resolution|resolution]] 2.60Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3l01]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"pyrococcus_abyssi"_erauso_et_al._1993 "pyrococcus abyssi" erauso et al. 1993]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L01 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3l01]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi Pyrococcus abyssi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L01 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2bis|2bis]], [[1rzv|1rzv]], [[3cop|3cop]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PYRAB00770, PAB2292 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29292 "Pyrococcus abyssi" Erauso et al. 1993])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Starch_synthase Starch synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.21 2.4.1.21] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l01 OCA], [https://pdbe.org/3l01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l01 RCSB], [https://www.ebi.ac.uk/pdbsum/3l01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l01 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l01 OCA], [https://pdbe.org/3l01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l01 RCSB], [https://www.ebi.ac.uk/pdbsum/3l01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l01 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q9V2J8_PYRAB Q9V2J8_PYRAB] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Pyrococcus abyssi erauso et al. 1993]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Starch synthase]] | + | [[Category: Pyrococcus abyssi]] |
- | [[Category: Diaz, A]] | + | [[Category: Diaz A]] |
- | [[Category: Ferrer, J C]] | + | [[Category: Ferrer JC]] |
- | [[Category: Fita, I]] | + | [[Category: Fita I]] |
- | [[Category: Guinovart, J J]] | + | [[Category: Guinovart JJ]] |
- | [[Category: Martinez-Pons, C]] | + | [[Category: Martinez-Pons C]] |
- | [[Category: Udp/adp-glucose-glycogen synthase]]
| + | |
- | [[Category: Glycosyltransferase family]]
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- | [[Category: Transferase]]
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- | [[Category: Two rossman fold]]
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| Structural highlights
Function
Q9V2J8_PYRAB
Publication Abstract from PubMed
Glycogen synthase, a central enzyme in glucose metabolism, catalyzes the successive addition of alpha-1,4-linked glucose residues to the non-reducing end of a growing glycogen molecule. A non-catalytic glycogen-binding site, identified by x-ray crystallography on the surface of the glycogen synthase from the archaeon Pyrococcus abyssi, has been found to be functionally conserved in the eukaryotic enzymes. The disruption of this binding site in both the archaeal and the human muscle glycogen synthases has a large impact when glycogen is the acceptor substrate. Instead, the catalytic efficiency remains essentially unchanged when small oligosaccharides are used as substrates. Mutants of the human muscle enzyme with reduced affinity for glycogen also show an altered intracellular distribution and a marked decrease in their capacity to drive glycogen accumulation in vivo. The presence of a high affinity glycogen-binding site away from the active center explains not only the long-recognized strong binding of glycogen synthase to glycogen but also the processivity and the intracellular localization of the enzyme. These observations demonstrate that the glycogen-binding site is a critical regulatory element responsible for the in vivo catalytic efficiency of GS.
Processivity and Subcellular Localization of Glycogen Synthase Depend on a Non-catalytic High Affinity Glycogen-binding Site.,Diaz A, Martinez-Pons C, Fita I, Ferrer JC, Guinovart JJ J Biol Chem. 2011 May 27;286(21):18505-14. Epub 2011 Apr 4. PMID:21464127[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Diaz A, Martinez-Pons C, Fita I, Ferrer JC, Guinovart JJ. Processivity and Subcellular Localization of Glycogen Synthase Depend on a Non-catalytic High Affinity Glycogen-binding Site. J Biol Chem. 2011 May 27;286(21):18505-14. Epub 2011 Apr 4. PMID:21464127 doi:10.1074/jbc.M111.236109
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