This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Nitrogenase 3D structures
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 4: | Line 4: | ||
{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| - | *Nase Mo-Fe | + | *Nase Mo-Fe protein |
| - | **[[ | + | **[[3k1a]], [[1m1n]], [[2min]], [[3min]], [[3u7q]] – AvNase + subunit [CFe7MoS9 Fe8S7] - ''Azotobacter vinelandii''<br /> |
| - | **[[ | + | **[[7jrf]] - AvNase + subunit [CFe7MoS9 Fe8S7] + CO<br /> |
| - | **[[ | + | **[[4xpi]], [[5cx1]], [[7mci]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7]<br /> |
| - | **[[ | + | **[[4tku]], [[5bvg]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2]<br /> |
| - | **[[ | + | **[[8bts]], [[8e3v]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br /> |
| - | **[[6o7o]], [[6o7m]], [[6o7l]], [[6o7p]], [[6o7q]], [[6o7r]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br /> | + | **[[8dby]], [[8dpn]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] - Cryo EM<br /> |
| + | **[[8e3u]] - AvNase + subunit [CFe7MoS9 Fe7S7 Fe2]<br /> | ||
| + | **[[8e3t]] - AvNase + (mutant) subunit [CFe7MoS9 Fe7S7 Fe2]<br /> | ||
| + | **[[6o7o]], [[6o7m]], [[6o7l]], [[6o7p]], [[6o7q]], [[6o7r]], [[7ut6]] - AvNase + (mutant) subunit [CFe7MoS9 Fe8S7 Fe2]<br /> | ||
**[[6o7s]] - AvNase + (mutant) subunit [CFe7MoS9 Fe6S7 Fe2]<br /> | **[[6o7s]] - AvNase + (mutant) subunit [CFe7MoS9 Fe6S7 Fe2]<br /> | ||
| - | ** | + | **[[6op4]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] <br /> |
| - | **[[4tkv]], [[5bvh]]- AvNase | + | **[[4tkv]], [[5bvh]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + CO <br /> |
| - | **[[ | + | **[[7ut7]], [[8crs]], [[8dbx]], [[8enl]], [[8enm]], [[8enn]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] – Cryo EM<br /> |
| - | + | **[[6op1]], [[7jrf]] - AvNase + subunit [CFe7MoS9 Fe8S7 Mg] + CO <br /> | |
| - | **[[ | + | **[[6op2]], [[6op3]] - AvNase + subunit [CFe7MoS9 Fe8S7 Se Mg] <br /> |
| - | **[[ | + | **[[4nd8]], [[6bbl]], [[6cdk]], [[6vxt]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe+3]<br /> |
| - | **[[4nd8]], [[6bbl]], [[6cdk]], [[6vxt]] - AvNase | + | |
**[[6o7n]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3]<br /> | **[[6o7n]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3]<br /> | ||
**[[6ug0]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3] + N2<br /> | **[[6ug0]] - AvNase + subunit (mutant) [CFe7MoS9 Fe8S7 Fe+3] + N2<br /> | ||
| - | **[[1l5h]] - AvNase | + | **[[1fp4]] - AvNase + subunit (mutant) [Fe7MoS9 Fe8S8] <br /> |
| - | **[[1h1l]], [[1qgu]], [[1qh8]] - KpNase | + | **[[1l5h]] - AvNase + subunit [Fe8S7] <br /> |
| - | **[[1qh1]] - KpNase | + | **[[1h1l]], [[1qgu]], [[1qh8]] - KpNase + subunit [Fe7MoS9 Fe8S7] – ''Klebsiella pneumoniae''<br /> |
| - | + | **[[1qh1]] - KpNase + subunit [Fe7MoS9 Fe8S7] <br /> | |
| - | **[[1mio]] - CpNase | + | **[[1mio]] - CpNase + subunit (mutant) [Fe7MoS9 Fe8S8] - ''Clostridium pasteurianum''<br /> |
| - | **[[4wes]], [[4wn9]], [[4wna]], [[5vpw]], [[5vq3]], [[5vq4]] - CpNase | + | **[[4wes]], [[4wn9]], [[4wna]], [[5vpw]], [[5vq3]], [[5vq4]] - CpNase + subunit [CFe7MoS9 Fe8S7 Fe2]<br /> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | *Nase iron protein | ||
| - | **[[2c8v]] – AvNase iron protein 1 [FeS]<br /> | + | *Nase iron protein 1 |
| - | **[[1g1m]], [[1g5p]], [[2nip]], [[6o0b]], [[6n4k]], [[6n4j]] - AvNase iron protein 1 [Fe4S4]<br /> | + | |
| - | **[[1fp6]], [[1nip]], [[6n4m]], [[6n4l]] - AvNase iron protein 1 [Fe4S4] + ADP<br /> | + | **[[2c8v]], [[5koh]], [[5koj]] – AvNase + subunit iron protein 1 [FeS]<br /> |
| - | **[[ | + | **[[1g1m]], [[1g5p]], [[2nip]], [[6o0b]], [[6n4k]], [[6n4j]], [[7tpy]] - AvNase iron protein 1 [Fe4S4] <br /> |
| + | **[[1xcp]], [[1xd8]], [[1xdb]], [[1rw4]], [[1de0]] - AvNase iron protein 1 (mutant) [Fe4S4] <br /> | ||
| + | **[[1fp6]], [[1nip]], [[6n4m]], [[6n4l]], [[7tpv]],[[7tpw]], [[7tpx]], [[7tpz]], [[7tqj]] - AvNase iron protein 1 [Fe4S4] + ADP<br /> | ||
| + | **[[7t4h]],[[7tne]], [[7tpo]], [[7tq0]], [[7tq9]], [[7tqe]], [[7tqf]], [[7tqh]], [[7tqi]], [[7tqk]], [[7tpn]] - AvNase + subunit [Fe4S4 Fe4Se4] + ADP<br /> | ||
| + | **[[8boq]] - AvNase + subunit [Fe8S9 Fe8S7] + O<br /> | ||
**[[6q93]] - AvNase iron protein 1 [Fe4S4] + MgADP<br /> | **[[6q93]] - AvNase iron protein 1 [Fe4S4] + MgADP<br /> | ||
| + | **[[7qqa]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br /> | ||
**[[1xd9]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br /> | **[[1xd9]] - AvNase iron protein 1 (mutant) [Fe4S4] + MgADP<br /> | ||
**[[1cp2]] - CpNase iron protein 1 [Fe4S4] <br /> | **[[1cp2]] - CpNase iron protein 1 [Fe4S4] <br /> | ||
| Line 47: | Line 48: | ||
**[[7bi7]] - MtNase [Fe4S4 Fe8S7] <br /> | **[[7bi7]] - MtNase [Fe4S4 Fe8S7] <br /> | ||
| - | *Nase V-Fe protein | + | *Nase Mo-Fe protein complex with Nase iron protein 1 |
| + | |||
| + | **[[7uta]], [[8dfc]], [[8dfd]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP<br /> | ||
| + | **[[7ut8]], [[7ut9]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ATP – Cryo EM<br /> | ||
| + | **[[4wza]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ADP + ACP<br /> | ||
| + | **[[4wzb]] - AvNase + subunit [CFe7MoS9 Fe8S7 Fe2] + iron protein 1 [Fe4S4] + ACP<br /> | ||
| + | **[[2afh]], [[1m1y]], [[1g20]] - AvNase + subunit Fe7MoS9 Fe8S7]] + iron protein 1 [Fe4S4]<br /> | ||
| + | **[[2afi]], [[4wzb]], [[1m34]]. [[1g21]] - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + nucleotide<br /> | ||
| + | **[[1n2c]] - AvNase + subunit [Fe7MoS9 Fe8S7] + iron protein 1 [Fe4S4] + AlF4<br /> | ||
| + | |||
| + | * Nase V-Fe protein | ||
**[[5n6y]], [[6fea]] – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3<br /> | **[[5n6y]], [[6fea]] – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3<br /> | ||
**[[7adr]], [[7aiz]] – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3 + CO<br /> | **[[7adr]], [[7aiz]] – AvNase ++d subunit [C-Fe7-N-S7-V + Fe8-S7] + CO3 + CO<br /> | ||
**[[7ady]] – AvNase ++d subunit [C-Fe7-N-S7-V ] <br /> | **[[7ady]] – AvNase ++d subunit [C-Fe7-N-S7-V ] <br /> | ||
| + | **[[2kic]] – AvNase subunit – NMR<br /> | ||
| + | **[[7jma]] - MtNase – ''Methanothermobacter thermautotropicus''<br /> | ||
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Current revision
3D structure of Nitrogenase
Updated on 19-July-2023
