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| | <StructureSection load='2bm1' size='340' side='right'caption='[[2bm1]], [[Resolution|resolution]] 2.60Å' scene=''> | | <StructureSection load='2bm1' size='340' side='right'caption='[[2bm1]], [[Resolution|resolution]] 2.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2bm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BM1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2bm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BM1 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dar|1dar]], [[1efg|1efg]], [[1elo|1elo]], [[1fnm|1fnm]], [[1ip8|1ip8]], [[1ipm|1ipm]], [[1ipo|1ipo]], [[1ipr|1ipr]], [[1jqm|1jqm]], [[1jqs|1jqs]], [[1ktv|1ktv]], [[1pn6|1pn6]], [[2bm0|2bm0]], [[2efg|2efg]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bm1 OCA], [https://pdbe.org/2bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/2bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bm1 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bm1 OCA], [https://pdbe.org/2bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/2bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bm1 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/EFG_THETH EFG_THETH]] Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
| + | [https://www.uniprot.org/uniprot/EFG_THETH EFG_THETH] Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Flavobacterium thermophilum yoshida and oshima 1971]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Gudkov, A T]] | + | [[Category: Thermus thermophilus]] |
| - | [[Category: Hansson, S]] | + | [[Category: Gudkov AT]] |
| - | [[Category: Liljas, A]] | + | [[Category: Hansson S]] |
| - | [[Category: Logan, D T]] | + | [[Category: Liljas A]] |
| - | [[Category: Singh, R]] | + | [[Category: Logan DT]] |
| - | [[Category: Elongation factor]]
| + | [[Category: Singh R]] |
| - | [[Category: Gtp-binding]]
| + | |
| - | [[Category: Mutation gly16val]]
| + | |
| - | [[Category: Protein biosynthesis]]
| + | |
| - | [[Category: Switch ii]]
| + | |
| - | [[Category: Translation]]
| + | |
| Structural highlights
Function
EFG_THETH Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Fusidic acid (FA) is a steroid antibiotic commonly used against Gram positive bacterial infections. It inhibits protein synthesis by stalling elongation factor G (EF-G) on the ribosome after translocation. A significant number of the mutations conferring strong FA resistance have been mapped at the interfaces between domains G, III and V of EF-G. However, direct information on how such mutations affect the structure has hitherto not been available. Here we present the crystal structures of two mutants of Thermus thermophilus EF-G, G16V and T84A, which exhibit FA hypersensitivity and resistance in vitro, respectively. These mutants also have higher and lower affinity for GTP respectively than wild-type EF-G. The mutations cause significant conformational changes in the switch II loop that have opposite effects on the position of a key residue, Phe90, which undergoes large conformational changes. This correlates with the importance of Phe90 in FA sensitivity reported in previous studies. These structures substantiate the importance of the domain G/domain III/domain V interfaces as a key component of the FA binding site. The mutations also cause subtle changes in the environment of the "P-loop lysine", Lys25. This led us to examine the conformation of the equivalent residue in all structures of translational GTPases, which revealed that EF-G and eEF2 form a group separate from the others and suggested that the role of Lys25 may be different in the two groups.
Structural insights into fusidic acid resistance and sensitivity in EF-G.,Hansson S, Singh R, Gudkov AT, Liljas A, Logan DT J Mol Biol. 2005 May 13;348(4):939-49. PMID:15843024[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hansson S, Singh R, Gudkov AT, Liljas A, Logan DT. Structural insights into fusidic acid resistance and sensitivity in EF-G. J Mol Biol. 2005 May 13;348(4):939-49. PMID:15843024 doi:10.1016/j.jmb.2005.02.066
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