2bzv

From Proteopedia

(Difference between revisions)

Current revision

Human Enteric Adenovirus Serotype 41 Short Fiber Head (pH8)

Structural highlights

2bzv is a 1 chain structure with sequence from Human adenovirus 41. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.15Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SPIK2_ADE41 Forms spikes that protrude from each vertex of the icosahedral capsid. Interacts with host receptor CXCAR to provide virion initial attachment to target cell. Fiber proteins are shed during virus entry, when virus is still at the cell surface (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Human enteric adenoviruses of species F contain two fibers in the same virion, a long fiber which binds to coxsackievirus and adenovirus receptor (CAR) and a short fiber of unknown function. We have determined the high-resolution crystal structure of the short fiber head of human adenovirus serotype 41 (Ad41). The short fiber head has the characteristic fold of other known fiber heads but has three unusual features. First, it has much shorter loops between the beta-strands. Second, one of the usually well-ordered beta-strands on the distal face of the fiber head is highly disordered and this same region is sensitive to digestion with pepsin, an enzyme occurring naturally in the intestinal tract, the physiological environment of Ad41. Third, the AB loop has a deletion giving it a distinct conformation incompatible with CAR binding.

Crystal structure of enteric adenovirus serotype 41 short fiber head.,Seiradake E, Cusack S J Virol. 2005 Nov;79(22):14088-94. PMID:16254343^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Seiradake E, Cusack S. Crystal structure of enteric adenovirus serotype 41 short fiber head. J Virol. 2005 Nov;79(22):14088-94. PMID:16254343 doi:79/22/14088

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2bzv"

Categories: Human adenovirus 41 | Large Structures | Cusack S | Seiradake E

@@ Line 3: / Line 3: @@
 <StructureSection load='2bzv' size='340' side='right'caption='[[2bzv]], [[Resolution|resolution]] 1.15&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2bzv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ade41 Ade41]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BZV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2bzv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_adenovirus_41 Human adenovirus 41]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BZV FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2bzu|2bzu]]</div></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.15&#8491;</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bzv OCA], [https://pdbe.org/2bzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bzv RCSB], [https://www.ebi.ac.uk/pdbsum/2bzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bzv ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/SPIK2_ADE41 SPIK2_ADE41]] Forms spikes that protrude from each vertex of the icosahedral capsid. Interacts with host receptor CXCAR to provide virion initial attachment to target cell. Fiber proteins are shed during virus entry, when virus is still at the cell surface (By similarity).
+[https://www.uniprot.org/uniprot/SPIK2_ADE41 SPIK2_ADE41] Forms spikes that protrude from each vertex of the icosahedral capsid. Interacts with host receptor CXCAR to provide virion initial attachment to target cell. Fiber proteins are shed during virus entry, when virus is still at the cell surface (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 32: / Line 32: @@
 __TOC__
 </StructureSection>
-[[Category: Ade41]]
+[[Category: Human adenovirus 41]]
 [[Category: Large Structures]]
-[[Category: Cusack, S]]
+[[Category: Cusack S]]
-[[Category: Seiradake, E]]
+[[Category: Seiradake E]]
-[[Category: Ad41]]
-[[Category: Adenovirus]]
-[[Category: Fiber]]
-[[Category: Fiber protein]]
-[[Category: Receptor]]
-[[Category: Viral protein]]

2bzv

From Proteopedia

Current revision

Human Enteric Adenovirus Serotype 41 Short Fiber Head (pH8)

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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