7w3w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "7w3w" [edit=sysop:move=sysop])
Current revision (17:35, 29 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7w3w is ON HOLD
+
==X-ray structure of apo-VmFbpA, a ferric ion-binding protein from Vibrio metschnikovii==
 +
<StructureSection load='7w3w' size='340' side='right'caption='[[7w3w]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7w3w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_metschnikovii Vibrio metschnikovii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W3W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W3W FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.858&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w3w OCA], [https://pdbe.org/7w3w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w3w RCSB], [https://www.ebi.ac.uk/pdbsum/7w3w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w3w ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
BACKGROUND: New strategies are needed to combat multidrug-resistant bacteria. The restriction of iron uptake by bacteria is a promising way to inhibit their growth. We aimed to suppress the growth of Vibrio bacterial species by inhibiting their ferric ion-binding protein (FbpA) using food components. METHODS: Twenty spices were selected for the screening of FbpA inhibitors. The candidate was applied to antibacterial tests, and the mechanism was further studied. RESULTS: An active compound, rosmarinic acid (RA), was screened out. RA binds competitively and more tightly than Fe(3+) to VmFbpA, the FbpA from V. metschnikovii, with apparent KD values of 8 muM vs. 17 muM. Moreover, RA can inhibit the growth of V. metschnikovii to one-third of the control at 1000 muM. Interestingly, sodium citrate (SC) enhances the growth inhibition effect of RA, although SC only does not inhibit the growth. The combination of RA/SC completely inhibits the growth of not only V. metschnikovii at 100/100 muM but also the vibriosis-causative pathogens V. vulnificus and V. parahaemolyticus, at 100/100 and 1000/100 muM, respectively. However, RA/SC does not affect the growth of Escherichia coli. CONCLUSIONS: RA/SC is a potential bacteriostatic agent against Vibrio species while causing little damage to indigenous gastrointestinal bacteria.
-
Authors: Lu, P., Sui, M., Zhang, M., Nagata, K.
+
Rosmarinic Acid and Sodium Citrate Have a Synergistic Bacteriostatic Effect against Vibrio Species by Inhibiting Iron Uptake.,Lu P, Sui M, Zhang M, Wang M, Kamiya T, Okamoto K, Itoh H, Okuda S, Suzuki M, Asakura T, Fujiwara T, Nagata K Int J Mol Sci. 2021 Dec 1;22(23). pii: ijms222313010. doi: 10.3390/ijms222313010. PMID:34884815<ref>PMID:34884815</ref>
-
Description: X-ray structure of apo-VmFbpA, a ferric ion-binding protein from vibrio metschnikovii
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Lu, P]]
+
<div class="pdbe-citations 7w3w" style="background-color:#fffaf0;"></div>
-
[[Category: Zhang, M]]
+
== References ==
-
[[Category: Nagata, K]]
+
<references/>
-
[[Category: Sui, M]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Vibrio metschnikovii]]
 +
[[Category: Lu P]]
 +
[[Category: Nagata K]]
 +
[[Category: Sui M]]
 +
[[Category: Zhang M]]

Current revision

X-ray structure of apo-VmFbpA, a ferric ion-binding protein from Vibrio metschnikovii

PDB ID 7w3w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools