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| ==NMR Solution structure of linear [T20K]kalataB1== | | ==NMR Solution structure of linear [T20K]kalataB1== |
- | <StructureSection load='7rfa' size='340' side='right'caption='[[7rfa]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='7rfa' size='340' side='right'caption='[[7rfa]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[7rfa]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RFA FirstGlance]. <br> | + | <table><tr><td colspan='2'>Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RFA FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rfa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rfa OCA], [https://pdbe.org/7rfa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rfa RCSB], [https://www.ebi.ac.uk/pdbsum/7rfa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rfa ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rfa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rfa OCA], [https://pdbe.org/7rfa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rfa RCSB], [https://www.ebi.ac.uk/pdbsum/7rfa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rfa ProSAT]</span></td></tr> |
| </table> | | </table> |
- | == Function == | |
- | [[https://www.uniprot.org/uniprot/KAB4_OLDAF KAB4_OLDAF]] Probably participates in a plant defense mechanism. | |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Craik, D J]] | + | [[Category: Craik DJ]] |
- | [[Category: Gruber, C W]] | + | [[Category: Gruber CW]] |
- | [[Category: Harvey, P J]] | + | [[Category: Harvey PJ]] |
- | [[Category: Biosynthetic protein]]
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- | [[Category: Linear peptide acyclotide]]
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- | [[Category: Peptide cyclotide]]
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| Structural highlights
Publication Abstract from PubMed
The cyclotide T20K inhibits the proliferation of human immune cells and is currently in clinical trials for multiple sclerosis. Here, we provide novel functional data and mechanistic insights into structure-activity relationships of T20K. Analogs with partial or complete reduction of the cystine knot had loss of function in proliferation experiments. Similarly, an acyclic analog of T20K was inactive in lymphocyte bioassays. The lack of activity of non-native peptide analogs appears to be associated with the ability of cyclotides to interact with and penetrate cell membranes, since cellular uptake studies demonstrated fast fractional transfer only of the native peptide into the cytosol of human immune cells. Therefore, structural differences between cyclic and linear native folded peptides were investigated by NMR to elucidate structure-activity relationships. Acyclic T20K had a less rigid backbone and considerable structural changes in loops 1 and 6 compared to the native cyclic T20K, supporting the idea that the cyclic cystine knot motif is a unique bioactive scaffold. This study provides evidence that this structural motif in cyclotides governs bioactivity, interactions with and transport across biological membranes, and the structural integrity of these peptides. These observations could be useful to understand the structure-activity of other cystine knot proteins due to the structural conservation of the cystine knot motif across evolution and to provide guidance for the design of novel cyclic cysteine-stabilized molecules.
Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides.,Hellinger R, Muratspahic E, Devi S, Koehbach J, Vasileva M, Harvey PJ, Craik DJ, Grundemann C, Gruber CW ACS Chem Biol. 2021 Sep 30. doi: 10.1021/acschembio.1c00524. PMID:34592097[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hellinger R, Muratspahic E, Devi S, Koehbach J, Vasileva M, Harvey PJ, Craik DJ, Grundemann C, Gruber CW. Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides. ACS Chem Biol. 2021 Sep 30. doi: 10.1021/acschembio.1c00524. PMID:34592097 doi:http://dx.doi.org/10.1021/acschembio.1c00524
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