Sandbox Reserved 1690

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:15, 9 December 2021) (edit) (undo)
 
(One intermediate revision not shown.)
Line 6: Line 6:
== Function of your protein ==
== Function of your protein ==
-
This is a picture of my protein with The Ligand highlighted as shown. Our protein’s main function is to degrade GA and can be found in Fusarium oxysporum, a phytopathogenic fungus that uses GA as the sole carbon source for growth. It “hydrolyzes the glycosidic linkages of α-L-
+
This is a picture of my protein, L-rhamnose-alpha-1,4-D-glucuronate lyase, with The Ligand highlighted as shown. Our protein’s main function is to degrade GA and can be found in Fusarium oxysporum, a phytopathogenic fungus that uses GA as the sole carbon source for growth. It “hydrolyzes the glycosidic linkages of α-L-
rhamnose-(1→4)-D-glucuronic acid (Rha–GlcA) present in GA side chains to release Rha through
rhamnose-(1→4)-D-glucuronic acid (Rha–GlcA) present in GA side chains to release Rha through
an anomer-retaining mechanism” (Kondo).
an anomer-retaining mechanism” (Kondo).
Line 24: Line 24:
<scene name='89/892733/Spacefill_model/1'>Spacefill Model</scene>
<scene name='89/892733/Spacefill_model/1'>Spacefill Model</scene>
<scene name='89/892733/Hydrophobicity_view/1'>Hydrophobicity View</scene>\
<scene name='89/892733/Hydrophobicity_view/1'>Hydrophobicity View</scene>\
-
The hydrophobic regions of the protein are extremely important to the mechanism of this protein.
+
The hydrophobic regions of the protein are extremely important to the mechanism of this protein as the reaction is dependent on the hydrogen bonding taking place at the active site.
<scene name='89/892733/Sheet_structure/1'>Secondary Structures Highlighted</scene>
<scene name='89/892733/Sheet_structure/1'>Secondary Structures Highlighted</scene>
<scene name='89/892733/His48_shown_in_black/1'>His48 in black in position</scene>
<scene name='89/892733/His48_shown_in_black/1'>His48 in black in position</scene>

Current revision

This Sandbox is Reserved from 10/01/2021 through 01/01//2022 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1690 through Sandbox Reserved 1699.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1690"
Personal tools