7w9y

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(New page: '''Unreleased structure''' The entry 7w9y is ON HOLD Authors: Description: Category: Unreleased Structures)
Current revision (17:38, 29 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7w9y is ON HOLD
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==Crystal structure of Bacillus subtilis YugJ in complex with NADP and nickel==
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<StructureSection load='7w9y' size='340' side='right'caption='[[7w9y]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7w9y]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._spizizenii_ATCC_6633_=_JCM_2499 Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W9Y FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w9y OCA], [https://pdbe.org/7w9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w9y RCSB], [https://www.ebi.ac.uk/pdbsum/7w9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w9y ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A5F2KLJ3_BACIU A0A5F2KLJ3_BACIU]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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NAD(H)/NADP(H)-dependent aldehyde/alcohol oxidoreductase (AAOR) participates in a wide range of physiologically important cellular processes by reducing aldehydes or oxidizing alcohols. Among AAOR substrates, furan aldehyde is highly toxic to microorganisms. To counteract the toxic effect of furan aldehyde, some bacteria have evolved AAOR that converts furan aldehyde into a less toxic alcohol. Based on biochemical and structural analyses, we identified Bacillus subtilis YugJ as an atypical AAOR that reduces furan aldehyde. YugJ displayed high substrate specificity toward 5-hydroxymethylfurfural (HMF), a furan aldehyde, in an NADPH- and Ni(2+)-dependent manner. YugJ folds into a two-domain structure consisting of a Rossmann-like domain and an alpha-helical domain. YugJ interacts with NADP and Ni(2+) using the interdomain cleft of YugJ. A comparative analysis of three YugJ structures indicated that NADP(H) binding plays a key role in modulating the interdomain dynamics of YugJ. Noticeably, a nitrate ion was found in proximity to the nicotinamide ring of NADP in the YugJ structure, and the HMF-reducing activity of YugJ was inhibited by nitrate, providing insights into the substrate-binding mode of YugJ. These findings contribute to the characterization of the YugJ-mediated furan aldehyde reduction mechanism and to the rational design of improved furan aldehyde reductases for the biofuel industry.
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Authors:
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Structural and Biochemical Analysis of the Furan Aldehyde Reductase YugJ from Bacillus subtilis.,Cho HY, Nam MS, Hong HJ, Song WS, Yoon SI Int J Mol Sci. 2022 Feb 8;23(3):1882. doi: 10.3390/ijms23031882. PMID:35163804<ref>PMID:35163804</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 7w9y" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499]]
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[[Category: Large Structures]]
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[[Category: Cho HY]]
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[[Category: Hong HJ]]
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[[Category: Nam MS]]
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[[Category: Song WS]]
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[[Category: Yoon SI]]

Current revision

Crystal structure of Bacillus subtilis YugJ in complex with NADP and nickel

PDB ID 7w9y

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