1db1

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(New page: 200px<br /> <applet load="1db1" size="450" color="white" frame="true" align="right" spinBox="true" caption="1db1, resolution 1.8&Aring;" /> '''CRYSTAL STRUCTURE OF...)
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[[Image:1db1.gif|left|200px]]<br />
 
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<applet load="1db1" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1db1, resolution 1.8&Aring;" />
 
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'''CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D==
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The action of 1 alpha, 25-dihydroxyvitamin D3 is mediated by its nuclear, receptor (VDR), a ligand-dependent transcription regulator. We report the, 1.8 A resolution crystal structure of the complex between a VDR, ligand-binding domain (LBD) construct lacking the highly variable, VDR-specific insertion domain and vitamin D. The construct exhibits the, same binding affinity for vitamin D and transactivation ability as the, wild-type protein, showing that the N-terminal part of the LBD is, essential for its structural and functional integrity while the large, insertion peptide is dispensable. The structure reveals the active, conformation of the bound ligand and allows understanding of the different, binding properties of some synthetic analogs.
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<StructureSection load='1db1' size='340' side='right'caption='[[1db1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1db1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. The November 2012 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Vitamin D Receptor'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2012_11 10.2210/rcsb_pdb/mom_2012_11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DB1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DB1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VDX:5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL'>VDX</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1db1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1db1 OCA], [https://pdbe.org/1db1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1db1 RCSB], [https://www.ebi.ac.uk/pdbsum/1db1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1db1 ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN] Defects in VDR are the cause of rickets vitamin D-dependent type 2A (VDDR2A) [MIM:[https://omim.org/entry/277440 277440]. A disorder of vitamin D metabolism resulting in severe rickets, hypocalcemia and secondary hyperparathyroidism. Most patients have total alopecia in addition to rickets.<ref>PMID:2849209</ref> <ref>PMID:8381803</ref> <ref>PMID:1652893</ref> <ref>PMID:2177843</ref> <ref>PMID:8106618</ref> <ref>PMID:8392085</ref> <ref>PMID:7828346</ref> <ref>PMID:8675579</ref> <ref>PMID:8961271</ref> <ref>PMID:9005998</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/VDR_HUMAN VDR_HUMAN] Nuclear hormone receptor. Transcription factor that mediates the action of vitamin D3 by controlling the expression of hormone sensitive genes. Regulates transcription of hormone sensitive genes via its association with the WINAC complex, a chromatin-remodeling complex. Recruited to promoters via its interaction with the WINAC complex subunit BAZ1B/WSTF, which mediates the interaction with acetylated histones, an essential step for VDR-promoter association. Plays a central role in calcium homeostasis.<ref>PMID:16252006</ref> <ref>PMID:10678179</ref> <ref>PMID:15728261</ref> <ref>PMID:16913708</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/1db1_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1db1 ConSurf].
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<div style="clear:both"></div>
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==Disease==
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==See Also==
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Known diseases associated with this structure: Osteoporosis, involutional, 166710 (1) OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601769 601769]], Rickets, vitamin D-resistant, type IIA OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=601769 601769]]
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*[[Sandbox vdr|Sandbox vdr]]
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*[[Vitamin D receptor|Vitamin D receptor]]
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==About this Structure==
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*[[Vitamin D receptor 3D structures|Vitamin D receptor 3D structures]]
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1DB1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with VDX as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1DB1 OCA].
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== References ==
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<references/>
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==Reference==
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__TOC__
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The crystal structure of the nuclear receptor for vitamin D bound to its natural ligand., Rochel N, Wurtz JM, Mitschler A, Klaholz B, Moras D, Mol Cell. 2000 Jan;5(1):173-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10678179 10678179]
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Klaholz, B.]]
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Mitschler, A.]]
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[[Category: Vitamin D Receptor]]
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[[Category: Moras, D.]]
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[[Category: Klaholz B]]
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[[Category: Rochel, N.]]
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[[Category: Mitschler A]]
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[[Category: Wurtz, J.M.]]
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[[Category: Moras D]]
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[[Category: VDX]]
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[[Category: Rochel N]]
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[[Category: complex]]
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[[Category: Wurtz JM]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 16:30:40 2007''
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Current revision

CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D

PDB ID 1db1

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