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Test160122

From Proteopedia

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Current revision (14:53, 23 January 2022) (edit) (undo)
 
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<StructureSection load='3i3f' size='450' side='right' scene='90/900077/Cv/2' caption=''>
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<StructureSection load='3i3f' size='350' side='right' scene='90/901530/Cv/14' caption=''>
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This is a default text for your page '''Test160122'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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== Function ==
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'''23/01/22'''
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== Disease ==
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*<scene name='90/901530/Cv/24'>Tusual, color is chosen same as atom after clicking on atom</scene> - after that, the label color is remaining white
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*Everything is OK: <scene name='90/901530/Cv/30'>Similar to Tusual, color is chosen same as atom before clicking on atom</scene>
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== Relevance ==
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*<scene name='90/901530/Cv/26'>Trot</scene>
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*<scene name='90/901530/Cv/27'>Trock</scene>
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*<scene name='90/901530/Cv/28'>Twobble</scene>
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== Structural highlights ==
 
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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*<scene name='90/901530/Cv1/1'>Surfacenew</scene>
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*<scene name='90/901530/Cv1/2'>Surfacenew1</scene>
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*<scene name='90/901530/Cv1/3'>Morph_Loop_6models</scene><jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='90/901530/Cv1/4'>Morph_Palindrom_2models</scene><jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='90/901530/L22s/2'>Mutation L22S (copy saved in present page): </scene>
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame 1 1 play; animation off; frame 1; select [LEU]22;color selectionHalos green;selectionHalos on;
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</script>
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<text>Wild type </text>
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</jmolLink>
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</jmol>
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conformation and
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame 2 2 play; animation off; frame 2; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>mutation.
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</text>
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</jmolLink>
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</jmol>
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Click here to see the
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<jmol>
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<jmolLink>
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<script>
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animation off; frame all; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>mutated and wild type
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</text>
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</jmolLink>
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</jmol> residues together, and an
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame play; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>animation
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</text>
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</jmolLink>
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</jmol> between the two states. Putative new hydrogen bonds were added.
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<jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='90/901530/Cv1/5'>From uploaded file</scene>
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 +
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---------
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*<scene name='90/901530/Cv/4'>160122was_with_labels/now180122_without_labels</scene>
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*<scene name='90/901530/Cv/16'>180122saved_today_with_labels/in_text_without_labels</scene>
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*<scene name='90/901530/Cv/17'>180122saved_today/should_be_simple_copy_of_previous_scene_without_rotation</scene>
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*<scene name='90/901530/Cv/11'>Surface</scene>
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*<scene name='90/901530/Cv/19'>Te</scene>
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*<scene name='90/901530/Cv/23'>Terot</scene>
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*<scene name='90/901530/Cv/22'>Tewobble</scene>
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*<scene name='90/901530/Cv/3'>Test1</scene>
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*<scene name='90/901530/Cv/5'>Te3</scene>
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*<scene name='90/901530/Cv/10'>T8</scene> <jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='90/901530/Cv/12'>T7</scene> <jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='90/901530/Cv/8'>T7a</scene> <jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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*<scene name='75/751104/L22s/7'>Mutation L22S: </scene>
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame 1 1 play; animation off; frame 1; select [LEU]22;color selectionHalos green;selectionHalos on;
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</script>
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<text>Wild type </text>
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</jmolLink>
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</jmol>
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conformation and
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame 2 2 play; animation off; frame 2; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>mutation.
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</text>
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</jmolLink>
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</jmol>
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Click here to see the
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<jmol>
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<jmolLink>
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<script>
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animation off; frame all; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>mutated and wild type
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</text>
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</jmolLink>
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</jmol> residues together, and an
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<jmol>
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<jmolLink>
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<script>
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animation on; animation mode loop; frame play; select [SER]22;color selectionHalos red;selectionHalos on;
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</script>
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<text>animation
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</text>
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</jmolLink>
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</jmol> between the two states. Putative new hydrogen bonds were added.
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<jmol><jmolButton>
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<script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script>
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<text>Stop Animation</text>
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</jmolButton></jmol>
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 +
------------------------------
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[[Image:Figure3newt.png|left|450px|thumb|NEW: Despite the low sequence similarity the hypothetical protein is a prototypical YjgF/YER057c/UK114 endoribonuclease]]
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{{Clear}}
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[[Image:Trimercomparison1.png|left|450px|thumb|NEW]]
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{{Clear}}
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Current revision

PDB ID 3i3f

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Jaime Prilusky

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