This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7wkj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "7wkj" [edit=sysop:move=sysop])
Current revision (17:41, 29 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 7wkj is ON HOLD
+
==A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope from SARS-CoV-2-Hubei Province, 2021.==
 +
<StructureSection load='7wkj' size='340' side='right'caption='[[7wkj]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[7wkj]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7WKJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7WKJ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7wkj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7wkj OCA], [https://pdbe.org/7wkj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7wkj RCSB], [https://www.ebi.ac.uk/pdbsum/7wkj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7wkj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A6M6CC39_HUMAN A0A6M6CC39_HUMAN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
INTRODUCTION: Similar to antibody detection, severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2)-specific T-cell response evaluation is also pivotal among the coronavirus disease 2019 (COVID-19) convalescents and the vaccinated populations. Nucleocapsid (N) protein is one of the main structural proteins of SARS-CoV-2 and can trigger T-cell responses in humans. METHODS: An overlapping peptide pool covering the full length of the N protein was designed, peptides with positive T-cell activating potency in COVID-19 convalescents were screened, and CD8(+) T cell epitopes were further identified. The epitope was used to detect the SARS-CoV-2-specific CD8(+) T cell responses in COVID-19 convalescents based in intracellular cytokine staining and tetramer staining in flow cytometry. RESULTS: A human leukocyte antigen A (HLA-A)*1101-restricted CD8(+) T cell epitope, which could stimulate the production of IFN-gamma via peripheral blood mononuclear cells (PBMCs) of the convalescents was defined, and the tetramer generated with this epitope could detect SARS-CoV-2-specific T cells in the PBMCs of the convalescents. The structural investigation eliminated that the epitope was a typical HLA-A*1101-restricted T-cell epitope which was conserved among all the sarbecoviruses. DISCUSSION: The newly identified SARS-CoV-2-derived T-cell epitope was helpful to detect the cellular immunity against different sarbecoviruses including SARS-CoV and SARS-CoV-2. This study provided an evaluation method and also a peptide candidate for the research and development of T-cell based vaccine for the virus.
-
Authors: Zhang, J., Lu, D., Li, M., Liu, M.S., Yao, S.J., Zhan, J.B., Liu, J., Gao, G.F.
+
A COVID-19 T-Cell Response Detection Method Based on a Newly Identified Human CD8(+) T Cell Epitope from SARS-CoV-2 - Hubei Province, China, 2021.,Zhang J, Lu D, Li M, Liu M, Yao S, Zhan J, Liu WJ, Gao GF China CDC Wkly. 2022 Feb 4;4(5):83-87. doi: 10.46234/ccdcw2021.258. PMID:35186375<ref>PMID:35186375</ref>
-
Description: A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope from SARS-CoV-2-Hubei Province, 2021.
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Gao, G.F]]
+
<div class="pdbe-citations 7wkj" style="background-color:#fffaf0;"></div>
-
[[Category: Liu, M.S]]
+
 
-
[[Category: Lu, D]]
+
==See Also==
-
[[Category: Zhan, J.B]]
+
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
-
[[Category: Li, M]]
+
== References ==
-
[[Category: Liu, J]]
+
<references/>
-
[[Category: Yao, S.J]]
+
__TOC__
-
[[Category: Zhang, J]]
+
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Gao GF]]
 +
[[Category: Li M]]
 +
[[Category: Liu J]]
 +
[[Category: Liu MS]]
 +
[[Category: Lu D]]
 +
[[Category: Yao SJ]]
 +
[[Category: Zhan JB]]
 +
[[Category: Zhang J]]

Current revision

A COVID-19 T-cell response detection method based on a newly identified human CD8+ T cell epitope from SARS-CoV-2-Hubei Province, 2021.

PDB ID 7wkj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools