5sdq
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 5sdq is ON HOLD Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yu...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434887== | |
| + | <StructureSection load='5sdq' size='340' side='right'caption='[[5sdq]], [[Resolution|resolution]] 1.92Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5sdq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDQ FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=I8M:2-[(morpholin-4-yl)methyl]phenol'>I8M</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdq OCA], [https://pdbe.org/5sdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdq RCSB], [https://www.ebi.ac.uk/pdbsum/5sdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdq ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref> | ||
| - | + | ==See Also== | |
| - | + | *[[Dipeptidyl peptidase 3D structures|Dipeptidyl peptidase 3D structures]] | |
| - | + | == References == | |
| - | [[Category: | + | <references/> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Douangamath | + | [[Category: Porphyromonas gingivalis]] |
| - | [[Category: Fearon | + | [[Category: Bezerra GA]] |
| - | [[Category: | + | [[Category: Bountra C]] |
| - | [[Category: | + | [[Category: Coker JA]] |
| - | [[Category: | + | [[Category: Douangamath A]] |
| - | [[Category: | + | [[Category: Fearon D]] |
| - | [[Category: | + | [[Category: Foster WR]] |
| - | [[Category: | + | [[Category: Koekemoer L]] |
| - | [[Category: | + | [[Category: Krojer T]] |
| + | [[Category: Talon R]] | ||
| + | [[Category: Tham CT]] | ||
| + | [[Category: Yue WW]] | ||
| + | [[Category: Von Delft F]] | ||
Current revision
PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434887
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Categories: Large Structures | Porphyromonas gingivalis | Bezerra GA | Bountra C | Coker JA | Douangamath A | Fearon D | Foster WR | Koekemoer L | Krojer T | Talon R | Tham CT | Yue WW | Von Delft F
