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3c1b

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Current revision (12:19, 30 August 2023) (edit) (undo)
 
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<StructureSection load='3c1b' size='340' side='right'caption='[[3c1b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='3c1b' size='340' side='right'caption='[[3c1b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3c1b]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/African_clawed_frog African clawed frog] and [https://en.wikipedia.org/wiki/Silurana_(xenopus)_tropicalis Silurana (xenopus) tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C1B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3c1b]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis] and [https://en.wikipedia.org/wiki/Xenopus_tropicalis Xenopus tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C1B FirstGlance]. <br>
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ML3:2-{[(2R)-2-AMINO-2-CARBOXYETHYL]SULFANYL}-N,N,N-TRIMETHYLETHANAMINIUM'>ML3</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kx5|1kx5]], [[1zla|1zla]], [[1aoi|1aoi]], [[1f66|1f66]], [[1kx4|1kx4]], [[1kx3|1kx3]], [[3c1c|3c1c]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ML3:2-{[(2R)-2-AMINO-2-CARBOXYETHYL]SULFANYL}-N,N,N-TRIMETHYLETHANAMINIUM'>ML3</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Histone H3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8355 African clawed frog]), Histone H4 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8355 African clawed frog]), Histone H2A ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8355 African clawed frog]), hist2h2bf, TGas058p09.1-001 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8364 Silurana (Xenopus) tropicalis])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c1b OCA], [https://pdbe.org/3c1b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c1b RCSB], [https://www.ebi.ac.uk/pdbsum/3c1b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c1b ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c1b OCA], [https://pdbe.org/3c1b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c1b RCSB], [https://www.ebi.ac.uk/pdbsum/3c1b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c1b ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/H3C_XENLA H3C_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. [[https://www.uniprot.org/uniprot/H2A1_XENLA H2A1_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. [[https://www.uniprot.org/uniprot/H4_XENLA H4_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
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[https://www.uniprot.org/uniprot/Q28D68_XENTR Q28D68_XENTR]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: African clawed frog]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chodaparambil, J]]
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[[Category: Xenopus laevis]]
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[[Category: Hansen, J]]
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[[Category: Xenopus tropicalis]]
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[[Category: Lu, X]]
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[[Category: Chodaparambil J]]
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[[Category: Luger, K]]
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[[Category: Hansen J]]
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[[Category: Shokat, K]]
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[[Category: Lu X]]
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[[Category: Simon, M]]
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[[Category: Luger K]]
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[[Category: Acetylation]]
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[[Category: Shokat K]]
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[[Category: Chromatin]]
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[[Category: Simon M]]
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[[Category: Chromosomal protein]]
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[[Category: Dimethylated histone]]
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[[Category: Dna-binding]]
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[[Category: Histone modification]]
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[[Category: Methylation]]
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[[Category: Nucleosomal array]]
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[[Category: Nucleosomal surface]]
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[[Category: Nucleosome]]
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[[Category: Nucleosome core]]
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[[Category: Nucleus]]
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[[Category: Phosphoprotein]]
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[[Category: Structural protein-dna complex]]
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[[Category: Trimethylated histone]]
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[[Category: Ubl conjugation]]
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Current revision

The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin structure

PDB ID 3c1b

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