2kvn
From Proteopedia
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==Phi29 E-loop hairpin== | ==Phi29 E-loop hairpin== | ||
| - | <StructureSection load='2kvn' size='340' side='right'caption='[[2kvn | + | <StructureSection load='2kvn' size='340' side='right'caption='[[2kvn]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2kvn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KVN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KVN FirstGlance]. <br> | <table><tr><td colspan='2'>[[2kvn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KVN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KVN FirstGlance]. <br> | ||
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kvn OCA], [https://pdbe.org/2kvn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kvn RCSB], [https://www.ebi.ac.uk/pdbsum/2kvn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kvn ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kvn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kvn OCA], [https://pdbe.org/2kvn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kvn RCSB], [https://www.ebi.ac.uk/pdbsum/2kvn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kvn ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | The Bacillus subtilis phage varphi29 packaging motor requires prohead RNA for genome encapsidation. The nuclear magnetic resonance structure of the prohead RNA E-loop hairpin, r(5'AUUGAGUU), is presented and compared to predictions from MC-SYM. The prohead RNA E-loop hairpins contain sequences similar to rRNA hairpins. Comparison of predicted and experimentally determined prohead and ribosomal hairpin structures reveals that sequence similarity is a stronger determinant of hairpin structural similarity than grouping similar types of RNA. All the hairpins contain a U-turn motif but differ in the first noncanonical pair and backbone orientation. These structures provide benchmarks for further improvements in RNA structure predictions from sequence. | ||
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| - | Nuclear Magnetic Resonance Structure of the Prohead RNA E-Loop Hairpin .,Harris S, Schroeder SJ Biochemistry. 2010 Jul 1. PMID:20550192<ref>PMID:20550192</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 2kvn" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Harris | + | [[Category: Harris SM]] |
| - | [[Category: Schroeder | + | [[Category: Schroeder SJ]] |
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Current revision
Phi29 E-loop hairpin
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