2l2j

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==Solution NMR structure of the lower part of the R/G stem loop RNA==
==Solution NMR structure of the lower part of the R/G stem loop RNA==
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<StructureSection load='2l2j' size='340' side='right'caption='[[2l2j]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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<StructureSection load='2l2j' size='340' side='right'caption='[[2l2j]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2l2j]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L2J FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2l2j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L2J FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2l2k|2l2k]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l2j OCA], [https://pdbe.org/2l2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l2j RCSB], [https://www.ebi.ac.uk/pdbsum/2l2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l2j ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l2j OCA], [https://pdbe.org/2l2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l2j RCSB], [https://www.ebi.ac.uk/pdbsum/2l2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l2j ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Sequence-dependent recognition of dsDNA-binding proteins is well understood, yet sequence-specific recognition of dsRNA by proteins remains largely unknown, despite their importance in RNA maturation pathways. Adenosine deaminases that act on RNA (ADARs) recode genomic information by the site-selective deamination of adenosine. Here, we report the solution structure of the ADAR2 double-stranded RNA-binding motifs (dsRBMs) bound to a stem-loop pre-mRNA encoding the R/G editing site of GluR-2. The structure provides a molecular basis for how dsRBMs recognize the shape, and also more surprisingly, the sequence of the dsRNA. The unexpected direct readout of the RNA primary sequence by dsRBMs is achieved via the minor groove of the dsRNA and this recognition is critical for both editing and binding affinity at the R/G site of GluR-2. More generally, our findings suggest a solution to the sequence-specific paradox faced by many dsRBM-containing proteins that are involved in post-transcriptional regulation of gene expression.
 
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The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove.,Stefl R, Oberstrass FC, Hood JL, Jourdan M, Zimmermann M, Skrisovska L, Maris C, Peng L, Hofr C, Emeson RB, Allain FH Cell. 2010 Oct 15;143(2):225-37. PMID:20946981<ref>PMID:20946981</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 2l2j" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Allain, F H.T]]
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[[Category: Allain FH-T]]
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[[Category: Oberstrass, F F]]
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[[Category: Oberstrass FF]]
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[[Category: Stefl, R]]
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[[Category: Stefl R]]
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[[Category: Ac mismatch]]
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[[Category: Rna]]
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[[Category: Rna-editing]]
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[[Category: Stem-loop]]
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Current revision

Solution NMR structure of the lower part of the R/G stem loop RNA

PDB ID 2l2j

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