3d1f

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Current revision (12:37, 30 August 2023) (edit) (undo)
 
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<StructureSection load='3d1f' size='340' side='right'caption='[[3d1f]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='3d1f' size='340' side='right'caption='[[3d1f]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3d1f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D1F FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3d1f]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D1F FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=323:2-[3,6-BIS(DIMETHYLAMINO)XANTHEN-9-YL]-5-METHANOYL-BENZOATE'>323</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2pol|2pol]], [[3bep|3bep]], [[3d1e|3d1e]], [[3d1g|3d1g]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=323:2-[3,6-BIS(DIMETHYLAMINO)XANTHEN-9-YL]-5-METHANOYL-BENZOATE'>323</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dnaN ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1f OCA], [https://pdbe.org/3d1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d1f RCSB], [https://www.ebi.ac.uk/pdbsum/3d1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1f OCA], [https://pdbe.org/3d1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d1f RCSB], [https://www.ebi.ac.uk/pdbsum/3d1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/DPO3B_ECOLI DPO3B_ECOLI]] DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA.
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[https://www.uniprot.org/uniprot/DPO3B_ECOLI DPO3B_ECOLI] DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP-independent) along duplex DNA.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</div>
</div>
<div class="pdbe-citations 3d1f" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3d1f" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: DNA-directed DNA polymerase]]
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[[Category: Escherichia coli K-12]]
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[[Category: Escherichia coli]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Donnell, M O]]
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[[Category: Georgescu RE]]
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[[Category: Georgescu, R E]]
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[[Category: Kong X-P]]
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[[Category: Kong, X P]]
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[[Category: Kuriyan J]]
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[[Category: Kuriyan, J]]
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[[Category: O'Donnell M]]
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[[Category: Seung-Sup, K]]
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[[Category: Seung-Sup K]]
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[[Category: Yurieva, O]]
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[[Category: Yurieva O]]
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[[Category: Antibiotic target]]
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[[Category: Chemical probe]]
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[[Category: Dna polymerase]]
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[[Category: Dna replication]]
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[[Category: Dna sliding clamp]]
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[[Category: Rational drug design]]
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[[Category: Transcription]]
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[[Category: Transferase]]
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Current revision

Crystal structure of E. coli sliding clamp (beta) bound to a polymerase III peptide

PDB ID 3d1f

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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