7tra

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'''Unreleased structure'''
 
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The entry 7tra is ON HOLD
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==Cascade complex from type I-A CRISPR-Cas system==
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<StructureSection load='7tra' size='340' side='right'caption='[[7tra]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7tra]] is a 19 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TRA FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tra OCA], [https://pdbe.org/7tra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tra RCSB], [https://www.ebi.ac.uk/pdbsum/7tra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tra ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A5C0XNV5_PYRFU A0A5C0XNV5_PYRFU]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Type I CRISPR-Cas systems typically rely on a two-step process to degrade DNA. First, an RNA-guided complex named Cascade identifies the complementary DNA target. The helicase-nuclease fusion enzyme Cas3 is then recruited in trans for processive DNA degradation. Contrary to this model, here, we show that type I-A Cascade and Cas3 function as an integral effector complex. We provide four cryoelectron microscopy (cryo-EM) snapshots of the Pyrococcus furiosus (Pfu) type I-A effector complex in different stages of DNA recognition and degradation. The HD nuclease of Cas3 is autoinhibited inside the effector complex. It is only allosterically activated upon full R-loop formation, when the entire targeted region has been validated by the RNA guide. The mechanistic insights inspired us to convert Pfu Cascade-Cas3 into a high-sensitivity, low-background, and temperature-activated nucleic acid detection tool. Moreover, Pfu CRISPR-Cas3 shows robust bi-directional deletion-editing activity in human cells, which could find usage in allele-specific inactivation of disease-causing mutations.
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Authors: Hu, C., Ni, D., Nam, K.H., Majumdar, S., McLean, J., Stahlberg, H., Terns, M., Ke, A.
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Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.,Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A Mol Cell. 2022 Aug 4;82(15):2754-2768.e5. doi: 10.1016/j.molcel.2022.06.007. Epub , 2022 Jul 13. PMID:35835111<ref>PMID:35835111</ref>
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Description: Cascade complex from type I-A CRISPR-Cas system
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Majumdar, S]]
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<div class="pdbe-citations 7tra" style="background-color:#fffaf0;"></div>
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[[Category: Ke, A]]
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== References ==
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[[Category: Mclean, J]]
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<references/>
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[[Category: Terns, M]]
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__TOC__
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[[Category: Ni, D]]
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</StructureSection>
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[[Category: Stahlberg, H]]
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[[Category: Escherichia coli]]
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[[Category: Hu, C]]
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[[Category: Large Structures]]
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[[Category: Nam, K.H]]
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[[Category: Pyrococcus furiosus DSM 3638]]
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[[Category: Hu C]]
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[[Category: Ke A]]
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[[Category: Majumdar S]]
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[[Category: McLean J]]
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[[Category: Nam KH]]
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[[Category: Ni D]]
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[[Category: Stahlberg H]]
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[[Category: Terns M]]

Current revision

Cascade complex from type I-A CRISPR-Cas system

PDB ID 7tra

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