This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dn9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:50, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3dn9' size='340' side='right'caption='[[3dn9]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
<StructureSection load='3dn9' size='340' side='right'caption='[[3dn9]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dn9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphanocapsa_sp._(strain_n-1) Aphanocapsa sp. (strain n-1)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DN9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DN9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dn9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DN9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DN9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3bn4|3bn4]], [[3cim|3cim]], [[2a1b|2a1b]], [[2a10|2a10]], [[2a18|2a18]], [[3dnc|3dnc]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ccmK1, sll1029 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1148 Aphanocapsa sp. (strain N-1)])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dn9 OCA], [https://pdbe.org/3dn9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dn9 RCSB], [https://www.ebi.ac.uk/pdbsum/3dn9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dn9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dn9 OCA], [https://pdbe.org/3dn9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dn9 RCSB], [https://www.ebi.ac.uk/pdbsum/3dn9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dn9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/CCMK1_SYNY3 CCMK1_SYNY3]] May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered (By similarity).
+
[https://www.uniprot.org/uniprot/CCMK1_SYNY3 CCMK1_SYNY3] May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Sawaya, M R]]
+
[[Category: Synechocystis sp. PCC 6803]]
-
[[Category: Tanaka, S]]
+
[[Category: Sawaya MR]]
-
[[Category: Yeates, T O]]
+
[[Category: Tanaka S]]
-
[[Category: Hexamer]]
+
[[Category: Yeates TO]]
-
[[Category: Structural protein]]
+

Current revision

Carboxysome Subunit, CcmK1 C-terminal deletion mutant

PDB ID 3dn9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools