7drj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:32, 29 May 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7drj' size='340' side='right'caption='[[7drj]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='7drj' size='340' side='right'caption='[[7drj]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7drj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DRJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=BU1:1,4-BUTANEDIOL'>BU1</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PO9:[(2R)-2-hexadecanoyloxy-3-[oxidanyl-[(2S)-2-oxidanyl-3-phosphonooxy-propoxy]phosphoryl]oxy-propyl]+(Z)-octadec-9-enoate'>PO9</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/CDP-diacylglycerol--glycerol-3-phosphate_1-phosphatidyltransferase CDP-diacylglycerol--glycerol-3-phosphate 1-phosphatidyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.8.5 2.7.8.5] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=BU1:1,4-BUTANEDIOL'>BU1</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=PO9:[(2R)-2-hexadecanoyloxy-3-[oxidanyl-[(2S)-2-oxidanyl-3-phosphonooxy-propoxy]phosphoryl]oxy-propyl]+(Z)-octadec-9-enoate'>PO9</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7drj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7drj OCA], [https://pdbe.org/7drj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7drj RCSB], [https://www.ebi.ac.uk/pdbsum/7drj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7drj ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7drj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7drj OCA], [https://pdbe.org/7drj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7drj RCSB], [https://www.ebi.ac.uk/pdbsum/7drj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7drj ProSAT]</span></td></tr>
</table>
</table>
-
== Function ==
 
-
[[https://www.uniprot.org/uniprot/PGSA_STAAN PGSA_STAAN]] This protein catalyzes the committed step to the synthesis of the acidic phospholipids.
 
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Phosphatidylglycerol is a crucial phospholipid found ubiquitously in biological membranes of prokaryotic and eukaryotic cells. The phosphatidylglycerol phosphate (PGP) synthase (PgsA), a membrane-embedded enzyme, catalyzes the primary reaction of phosphatidylglycerol biosynthesis. Mutations in pgsA frequently correlate with daptomycin resistance in Staphylococcus aureus and other prevalent infectious pathogens. Here we report the crystal structures of S. aureus PgsA (SaPgsA) captured at two distinct states of the catalytic process, with lipid substrate (cytidine diphosphate-diacylglycerol, CDP-DAG) or product (PGP) bound to the active site within a trifurcated amphipathic cavity. The hydrophilic head groups of CDP-DAG and PGP occupy two different pockets in the cavity, inducing local conformational changes. An elongated membrane-exposed surface groove accommodates the fatty acyl chains of CDP-DAG/PGP and opens a lateral portal for lipid entry/release. Remarkably, the daptomycin resistance-related mutations mostly cluster around the active site, causing reduction of enzymatic activity. Our results provide detailed mechanistic insights into the dynamic catalytic process of PgsA and structural frameworks beneficial for development of antimicrobial agents targeting PgsA from pathogenic bacteria.
 
- 
-
The phosphatidylglycerol phosphate synthase PgsA utilizes a trifurcated amphipathic cavity for catalysis at the membrane-cytosol interface.,Yang B, Yao H, Li D, Liu Z Curr Res Struct Biol. 2021 Nov 23;3:312-323. doi: 10.1016/j.crstbi.2021.11.005., eCollection 2021. PMID:34901881<ref>PMID:34901881</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 7drj" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: CDP-diacylglycerol--glycerol-3-phosphate 1-phosphatidyltransferase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Liu, Z F]]
+
[[Category: Liu ZF]]
-
[[Category: Yang, B W]]
+
[[Category: Yang BW]]
-
[[Category: Phospholipid synthase]]
+
-
[[Category: Product complex]]
+
-
[[Category: Staphylococcus aureus]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of phosphatidylglycerol phosphate synthase in complex with phosphatidylglycerol phosphate

PDB ID 7drj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools