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Ribonuclease 3D structures

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Current revision (08:19, 18 October 2023) (edit) (undo)
 
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Line 6: Line 6:
*RNase I or RNase A or RNase pancreatic
*RNase I or RNase A or RNase pancreatic
-
**[[4kxh]] - hRNase I - human<br />
+
**[[4kxh]] - hRNase I pancreatic- human<br />
-
**[[3f8g]], [[2e0j]], [[2e0l]], [[2e0m]], [[2e0o]], [[1h8x]], [[1e21]], [[1dza]] - hRNase I pancreatic (mutant) <br />
+
**[[2k11]] - hRNase I pancreatic - NMR<br />
**[[2k11]] - hRNase I pancreatic - NMR<br />
-
**[[3mwq]], [[3mx8]], [[3i67]], [[3i6f]], [[3i6h]], [[3i6j]], [[3i7w]], [[3eux]], [[3euy]], [[3euz]], [[3ev0]], [[3ev1]], [[3ev2]], [[3ev3]], [[3ev4]], [[3ev5]], [[3ev6]], [[3dh5]], [[2e3w]], [[2g4w]], [[2g4x]], [[2gbq]], [[2blp]], [[2blz]], [[2jvt]], [[1jvv]], [[1jvt]], [[1js0]], [[1fs3]], [[1kf2]], [[1kf3]], [[1kf4]], [[1kf5]], [[1kf7]], [[1kf8]], [[1aqp]], [[1a2w]], [[1rnw]], [[1rnz]], [[1rno]], [[1rnq]], [[1rbx]], [[1ssc]], [[3srn]], [[4srn]], [[1srn]], [[5rsa]], [[1afu]], [[1bel]], [[1c0b]], [[1c0c]], [[1lsq]], [[1rat]], [[1rbn]], [[1rha]], [[1rhb]], [[1rnx]], [[1rny]], [[1rsm]], [[1xps]], [[1xpt]], [[2g8q]], [[2rat]], [[3mzq]], [[3mzr]], [[3rat]], [[3rn3]], [[4rat]], [[5rat]], [[6rat]], [[7rat]], [[7rsa]], [[8rat]], [[8rsa]], [[9rat]], [[9rsa]], [[3mwr]], [[4ao1]], [[4j5z]], [[4j60]], [[4j61]], [[4j62]], [[4j63]], [[4j64]], [[4j65]], [[4j66]], [[4j67]], [[4j68]], [[4j69]], [[4j6a]], [[4mxf]], [[4ooh]], [[4ot4]], [[4qh3]], [[4rte]], [[4s0q]], [[4s18]], [[5d6u]], [[5jmg]], [[5jml]], [[5na9]], [[5obc]], [[5obd]], [[5obe]], [[4srn]], [[6etr]], [[6etq]], [[6etp]], [[6eto]], [[6etn]], [[6etm]], [[6etl]], [[6etk]], [[6xvx]], [6xw0]], [[6yo1]], [[7p8r]], [[7pni]] - bRNase I pancreatic - bovine<br />
+
**[[1dza]] - hRNase I pancreatic (mutant) <br />
 +
**[[1afu]], [[1bel]], [[1c0b]], [[1c0c]], [[1jvv]], [[1jvt]], [[1js0]], [[1fs3]], [[1kf2]], [[1kf3]], [[1kf4]], [[1kf5]], [[1kf7]], [[1kf8]], [[1aqp]], [[1a2w]], [[1rnw]], [[1rnz]], [[1rno]], [[1rnq]], [[1rbx]], [[1ssc]], [[1srn]], [[1lsq]], [[1rat]], [[1rbn]], [[1rha]], [[1rhb]], [[1rnx]], [[1rny]], [[1rsm]], [[1xps]], [[1xpt]], [[2e3w]], [[2g4w]], [[2g4x]], [[2gbq]], [[2blp]], [[2blz]], [[2jvt]], [[2g8q]], [[2rat]], [[3mwq]], [[3mx8]], [[3i67]], [[3i6f]], [[3i6h]], [[3i6j]], [[3i7w]], [[3eux]], [[3euy]], [[3euz]], [[3ev0]], [[3ev1]], [[3ev2]], [[3ev3]], [[3ev4]], [[3ev5]], [[3ev6]], [[3dh5]], [[3mwr]], [[3mzq]], [[3mzr]], [[3rat]], [[3srn]], [[3rn3]], [[4rat]], [[4ao1]], [[4j5z]], [[4j60]], [[4j61]], [[4j62]], [[4j63]], [[4j64]], [[4j65]], [[4j66]], [[4j67]], [[4j68]], [[4j69]], [[4j6a]], [[4mxf]], [[4ooh]], [[4ot4]], [[4qh3]], [[4rte]], [[4s0q]], [[4s18]], [[4srn]], [[5d6u]], [[5jmg]], [[5jml]], [[5na9]], [[5obc]], [[5obd]], [[5obe]], [[5rat]], [[5rsa]], [[6etr]], [[6etq]], [[6etp]], [[6eto]], [[6etn]], [[6etm]], [[6etl]], [[6etk]], [[6rat]], [[6xvx]], [[6xw0]], [[6yo1]], [[7p4r]], [[7p8r]], [[7pni]], [[7q75]], [[7q76]], [[7q77]], [[7q78]], [[7q79]], [[7q7a]], [[7q7b]], [[7rat]], [[7rsa]], [[8rat]], [[8rsa]], [[9rat]], [[9rsa]] - bRNase I pancreatic - bovine<br />
**[[3a1r]], [[4zz4]], [[5d97]], [[5rsa]], [[6rsa]] - bRNase I pancreatic - neutron<br />
**[[3a1r]], [[4zz4]], [[5d97]], [[5rsa]], [[6rsa]] - bRNase I pancreatic - neutron<br />
**[[2aas]] - bRNase I pancreatic - NMR<br />
**[[2aas]] - bRNase I pancreatic - NMR<br />
-
**[[3i7x]], [[3i7y]], [[3fkz]], [[3fl3]], [[3dh6]], [[3di7]], [[3di8]], [[3di9]], [[3dib]], [[3dic]], [[2oqf]], [[3bcm]], [[3bco]], [[3bcp]], [[2nui]], [[2op2]], [[1ymn]], [[1ymr]], [[1ymw]], [[2apq]], [[1izp]], [[1izq]], [[1izr]], [[1kh8]], [[1c8w]], [[1eic]], [[1eid]], [[1eie]], [[1dy5]], [[3rsd]], [[3rsk]], [[1ssa]], [[1ssb]], [[1a5p]], [[1a5q]], [[1c9v]], [[1c9x]], [[3rsp]], [[4rsd]], [[3ql1]], [[3ql2]], [[3rh1]], [[3rid]], [[4o36]], [[4o37]], [[4k7m]], [[4k7l]], [[4okf]] - bRNase I pancreatic (mutant)<br />
+
**[[1a5p]], [[1a5q]], [[1c9v]], [[1c8w]], [[1c9x]], [[1eic]], [[1eid]], [[1eie]], [[1dy5]], [[1izp]], [[1izq]], [[1izr]], [[1kh8]], [[1ssa]], [[1ssb]], [[1ymn]], [[1ymr]], [[1ymw]], [[2apq]], [[2nui]], [[2op2]], [[3i7x]], [[3i7y]], [[3fkz]], [[3fl3]], [[3dh6]], [[3di7]], [[3di8]], [[3di9]], [[3dib]], [[3dic]], [[2oqf]], [[3bcm]], [[3bco]], [[3bcp]], [[3rsd]], [[3rsk]], [[3rsp]], [[4rsd]], [[3ql1]], [[3ql2]], [[3rh1]], [[3rid]], [[4o36]], [[4o37]], [[4k7m]], [[4k7l]], [[4okf]] - bRNase I pancreatic (mutant)<br />
**[[1rar]], [[1ras]] - bRNase I pancreatic fluoroscent<br />
**[[1rar]], [[1ras]] - bRNase I pancreatic fluoroscent<br />
**[[6qmn]] - RNase I pancreatic - bison<br />
**[[6qmn]] - RNase I pancreatic - bison<br />
-
**[[1rra]] - RNase I - rat<br />
+
**[[1rra]] - rRNase I pancreatic - rat<br />
 +
**[[3f8g]], [[2e0j]], [[2e0l]], [[2e0m]], [[2e0o]], [[1h8x]], [[1e21]],
**[[3ljd]], [[3ln8]], [[2vq8]], [[2vq9]] - ZeRNase I - Zebrafish<br />
**[[3ljd]], [[3ln8]], [[2vq8]], [[2vq9]] - ZeRNase I - Zebrafish<br />
**[[2pqx]], [[2pqy]] - EcRNase I - ''Escherichia coli''<br />
**[[2pqx]], [[2pqy]] - EcRNase I - ''Escherichia coli''<br />
Line 31: Line 32:
**[[4l55]] - bRNase I + aziru<br />
**[[4l55]] - bRNase I + aziru<br />
**[[6qe9]] - bRNase I + Pt<br />
**[[6qe9]] - bRNase I + Pt<br />
 +
**[[7qhr]], [[7qpw]], [[7qpy]], [[7qpz]], [[7qq0]], [[7z6d]], [[7z6g]], [[8oqc]], [[8oqd]], [[8oqe]], [[8oqf]], [[8oqg]] - bRNase I + Rh derivative<br />
 +
**[[7r1p]] - bRNase I + Au derivative<br />
 +
**[[7qwh]] - bRNase I + V derivative<br />
**[[6pvu]], [[6pvv]], [[6pvw]], [[6pvx]] - bRNase I + polyphosphate<br />
**[[6pvu]], [[6pvv]], [[6pvw]], [[6pvx]] - bRNase I + polyphosphate<br />
**[[3tsr]] - mRNase I + inhibitor - mouse<br />
**[[3tsr]] - mRNase I + inhibitor - mouse<br />
Line 52: Line 56:
**[[1h1h]] - hRNase III + nucleotide<br />
**[[1h1h]] - hRNase III + nucleotide<br />
**[[6v5b]], [[6v5c]] - hRNase III + DGCR8 + microRNA – Cryo EM<br />
**[[6v5b]], [[6v5c]] - hRNase III + DGCR8 + microRNA – Cryo EM<br />
 +
**[[7ty1]] - RNase III - Macaque<br />
**[[1z5f]] - BuRNase III<br />
**[[1z5f]] - BuRNase III<br />
**[[1t4n]], [[1t4o]] - yRNase III - yeast - NMR<br />
**[[1t4n]], [[1t4o]] - yRNase III - yeast - NMR<br />
Line 63: Line 68:
**[[1o0w]] - TmRNase III - ''Thermotoga maritima''<br />
**[[1o0w]] - TmRNase III - ''Thermotoga maritima''<br />
**[[3n3w]], [[3o2r]] - RNase III nuclease domain - ''Campylobacter jejuni''<br />
**[[3n3w]], [[3o2r]] - RNase III nuclease domain - ''Campylobacter jejuni''<br />
 +
**[[7r97]] - EcRNase III (mutant) + RNA<br />
-
*RNase III Dicer
+
*RNase III Dicer or endoRNase dicer or double-strand-specific RNase mdcr-1
**[[4ngg]], [[4ngf]], [[4nha]] – hDicer platform-PAZ-connector helix cassette residues 765-1065 + RNA<br />
**[[4ngg]], [[4ngf]], [[4nha]] – hDicer platform-PAZ-connector helix cassette residues 765-1065 + RNA<br />
Line 73: Line 79:
**[[5zal]], [[5zam]] - hDicer + RISC-loading complex subunit TARBP2 + RNA<br />
**[[5zal]], [[5zam]] - hDicer + RISC-loading complex subunit TARBP2 + RNA<br />
**[[3c4b]], [[3c4t]] – mDicer RNase III+dsRNA binding domains <br />
**[[3c4b]], [[3c4t]] – mDicer RNase III+dsRNA binding domains <br />
 +
**[[7yz4]] – mDicer – Cryo EM <br />
 +
**[[7yym]], [[7yyn]], [[7zpi]] – mDicer RNase III+ RNA – Cryo EM <br />
 +
**[[7zpj]] – mDicer + RNA + TARBP2 – Cryo EM <br />
**[[6bua]] – DmDicer2 – ''Drosophila melanogaster''<br />
**[[6bua]] – DmDicer2 – ''Drosophila melanogaster''<br />
**[[6bu9]] – DmDicer2 + RNA <br />
**[[6bu9]] – DmDicer2 + RNA <br />
Line 92: Line 101:
**[[1ang]], [[1b1i]], [[1h52]], [[4aoh]], [[5eop]], [[5epz]], [[5eqo]] - hRNase 5 <br />
**[[1ang]], [[1b1i]], [[1h52]], [[4aoh]], [[5eop]], [[5epz]], [[5eqo]] - hRNase 5 <br />
**[[1awz]] – hAng - NMR<br />
**[[1awz]] – hAng - NMR<br />
-
**[[1b1e]], [[1b1j]], [[1h53]], [[1hby]], [[1k58]], [1k59]], [[1k5a]], [[1k5b]], [[1un3]], [[1un4]], [[1un5]], [[1gv7]], [[2ang]], [[4ahd]], [[4ahe]], [[4ahf]], [[4ahg]], [[4ahh]], [[4ahi]], [[4ahj]], [[4ahk]], [[4ahl]], [[4ahm]], [[4ahn]], [[4b36]], [[5m9v]], [[5m9t]], [[5m9s]], [[5m9r]], [[5m9q]], [[5m9p]], [[5m9m]], [[5m9j]], [[5m9g]], [[5m9c]], [[5m9a]], [[7pnj]], [[7pnr]] - hRNase 5 (mutant)<br />
+
**[[7npm]], [[8oo3]], [[8oo4]] – hAng + Pt derivative<br />
 +
**[[1b1e]], [[1b1j]], [[1gv7]], [[1h53]], [[1hby]], [[1k58]], [1k59]], [[1k5a]], [[1k5b]], [[1un3]], [[1un4]], [[1un5]], [[2ang]], [[4ahd]], [[4ahe]], [[4ahf]], [[4ahg]], [[4ahh]], [[4ahi]], [[4ahj]], [[4ahk]], [[4ahl]], [[4ahm]], [[4ahn]], [[4b36]], [[5m9v]], [[5m9t]], [[5m9s]], [[5m9r]], [[5m9q]], [[5m9p]], [[5m9m]], [[5m9j]], [[5m9g]], [[5m9c]], [[5m9a]], [[7pnj]], [[7pnp]], [[7pnr]] - hRNase 5 (mutant)<br />
**[[1h0d]] - hRNase 5 + antibody<br />
**[[1h0d]] - hRNase 5 + antibody<br />
**[[1a4y]] - hRNase 5 + RNae inhibitor<br />
**[[1a4y]] - hRNase 5 + RNae inhibitor<br />
 +
**[[8af0]] - hRNase 5 + RNA<br />
**[[1agi]] – bAng <br />
**[[1agi]] – bAng <br />
**[[1gio]] – bAng - NMR<br />
**[[1gio]] – bAng - NMR<br />
Line 127: Line 138:
**[[3da7]], [[1brs]], [[1bgs]] - BaRNase BA + barstar <br />
**[[3da7]], [[1brs]], [[1bgs]] - BaRNase BA + barstar <br />
**[[1x1u]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]], [[1b3s]], [[1x1w]] - BaRNase BA + barstar (mutant) <br />
**[[1x1u]], [[1x1x]], [[1x1y]], [[1b27]], [[1b2u]], [[1b3s]], [[1x1w]] - BaRNase BA + barstar (mutant) <br />
-
**[[1b2s]], [[2za4]]. [[6pqk]] - BaRNase BA (mutant) + barstar (mutant) <br />
+
**[[1b2s]], [[2za4]]. [[6pqk]], [[7mrx]] - BaRNase BA (mutant) + barstar (mutant) <br />
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br />
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br />
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br />
**[[1brn]], [[2kf5]], [[2kf6]], [[1rnb]] - BaRNase BA + nucleotide<br />
Line 137: Line 148:
*RNase E; Domains: recognition 1-28; S1 35-125; catalytic 1-515
*RNase E; Domains: recognition 1-28; S1 35-125; catalytic 1-515
 +
**[[8b0j]] - EcRNase E + RapZ + RNA – Cryo EM<br />
**[[2vmk]], [[2c4r]], [[2bx2]] - EcRNase E catalytic domain<br />
**[[2vmk]], [[2c4r]], [[2bx2]] - EcRNase E catalytic domain<br />
**[[1slj]] - EcRNase E S1 domain - NMR<br />
**[[1slj]] - EcRNase E S1 domain - NMR<br />
Line 165: Line 177:
**[[4z0u]] - EcRNase H + peptide<br />
**[[4z0u]] - EcRNase H + peptide<br />
**[[3d0p]], [[3ey1]], [[3i8d]], [[4opj]], [[4opk]], [[5swm]] - BhRNase H (mutant) + DNA - ''Bacillus halodurans''<br />
**[[3d0p]], [[3ey1]], [[3i8d]], [[4opj]], [[4opk]], [[5swm]] - BhRNase H (mutant) + DNA - ''Bacillus halodurans''<br />
 +
**[[8cty]], [[8ctz]], [[8cu0]], [[8sv3]], [[8sv4]] - RNase H (mutant) + DNA - ''Halalkalibacterium halodurans''<br />
**[[1zbf]] - BhRNase H (mutant) <br />
**[[1zbf]] - BhRNase H (mutant) <br />
**[[6dpp]], [[6dpo]], [[6dpn]], [[6dpm]], [[6dpl]], [[6dpk]], [[6dpj]], [[6dpi]], [[6dpg]], [[6dph]], [[6dpf]], [[6dpe]], [[6dpd]], [[6dpc]], [[6dpb]], [[6dpa]], [[6dp9]], [[6dp8]] [[6dp7]], [[6dp6]], [[6dp5]], [[6dp4]], [[6dp3]], [[6dp2]], [[6dp1]], [[6dp0]], [[6doz]], [[6doy]], [[6dox]], [[6dow]], [[6dov]], [[6dou]], [[6dot]], [[6dos]], [[6dor]], [[6doq]], [[6dop]], [[6doo]], [[6don]], [[6dom]], [[6dol]], [[6dok]], [[6doj]], [[6doi]], [[6doh]], [[6dog]], [[6dof]], [[6doe]], [[6dod]], [[6doc]], [[6dob]], [[6doa]], [[6do9]], [[6do8]], [[6dmv]], [[6dmn]] - BhRNase H + RNA + DNA<br />
**[[6dpp]], [[6dpo]], [[6dpn]], [[6dpm]], [[6dpl]], [[6dpk]], [[6dpj]], [[6dpi]], [[6dpg]], [[6dph]], [[6dpf]], [[6dpe]], [[6dpd]], [[6dpc]], [[6dpb]], [[6dpa]], [[6dp9]], [[6dp8]] [[6dp7]], [[6dp6]], [[6dp5]], [[6dp4]], [[6dp3]], [[6dp2]], [[6dp1]], [[6dp0]], [[6doz]], [[6doy]], [[6dox]], [[6dow]], [[6dov]], [[6dou]], [[6dot]], [[6dos]], [[6dor]], [[6doq]], [[6dop]], [[6doo]], [[6don]], [[6dom]], [[6dol]], [[6dok]], [[6doj]], [[6doi]], [[6doh]], [[6dog]], [[6dof]], [[6doe]], [[6dod]], [[6doc]], [[6dob]], [[6doa]], [[6do9]], [[6do8]], [[6dmv]], [[6dmn]] - BhRNase H + RNA + DNA<br />
Line 179: Line 192:
**[[1qhk]] - yRNase HI N terminal - NMR<br />
**[[1qhk]] - yRNase HI N terminal - NMR<br />
**[[3h08]] - RNase HI - ''Chlorobaculum tepidum''<br />
**[[3h08]] - RNase HI - ''Chlorobaculum tepidum''<br />
 +
**[[1g15]], [[1rdd]], [[1rnh]], [[7vsa]], [[7vsb]], [[7vsc]], [[7vsd]], [[7vse]] - EcRNase HI <br />
**[[3aa2]], [[3aa3]], [[3aa4]], [[3aa5]], [[2yv0]], [[2z1g]], [[2z1h]], [[2z1i]], [[2z1j]], [[1wse]], [[1wsf]], [[1wsg]], [[1wsh]], [[1wsi]], [[1wsj]], [[1jxb]], [[1jl1]], [[1f21]], [[1kva]], [[1kvb]], [[1kvc]], [[1goa]], [[1gob]], [[1goc]] - EcRNase HI (mutant) <br />
**[[3aa2]], [[3aa3]], [[3aa4]], [[3aa5]], [[2yv0]], [[2z1g]], [[2z1h]], [[2z1i]], [[2z1j]], [[1wse]], [[1wsf]], [[1wsg]], [[1wsh]], [[1wsi]], [[1wsj]], [[1jxb]], [[1jl1]], [[1f21]], [[1kva]], [[1kvb]], [[1kvc]], [[1goa]], [[1gob]], [[1goc]] - EcRNase HI (mutant) <br />
-
**[[1g15]], [[1rdd]], [[1rnh]] - EcRNase HI <br />
 
**[[1rch]] - EcRNase HI - NMR <br />
**[[1rch]] - EcRNase HI - NMR <br />
**[[2zqb]] - SoRNase HI (mutant) - ''Shewanella oneidensis''<br />
**[[2zqb]] - SoRNase HI (mutant) - ''Shewanella oneidensis''<br />
Line 191: Line 204:
**[[3puf]], [[3p56]], [[3p5j]] - hRNase HII subunits α+β+γ<br />
**[[3puf]], [[3p56]], [[3p5j]] - hRNase HII subunits α+β+γ<br />
 +
**[[7n2p]] - hRNase HII subunit β + HLA + macroglobulin + Tcr<br />
**[[3kio]] - mRNase HII subunits α+β+γ <br />
**[[3kio]] - mRNase HII subunits α+β+γ <br />
**[[3p83]] - AfRNase HII + DNA polymerase sliding clamp - ''Archaeoglobus fulgidus''<br />
**[[3p83]] - AfRNase HII + DNA polymerase sliding clamp - ''Archaeoglobus fulgidus''<br />
Line 201: Line 215:
**[[1eke]] - MjRNase HII - ''Methanocaldococcus jannaschii''<br />
**[[1eke]] - MjRNase HII - ''Methanocaldococcus jannaschii''<br />
**[[5y9p]] - SaRNase HII - ''Staphylococcus aureus''<br />
**[[5y9p]] - SaRNase HII - ''Staphylococcus aureus''<br />
 +
**[[7uwe]] - EcRNase HII in excision repair complex – Cryo EM<br />
*RNase HIII
*RNase HIII
Line 214: Line 229:
**[[3bk1]] - TtRNase J <br />
**[[3bk1]] - TtRNase J <br />
**[[3bk2]] - TtRNase J + nucleotide<br />
**[[3bk2]] - TtRNase J + nucleotide<br />
 +
**[[7pcr]] - RNase J – ''Helicobacter pylori''<br />
 +
**[[7wnt]] - MtRNase J <br />
 +
**[[7wnu]] - MtRNase J + RNA<br />
**[[3zq4]] - BsRNase J1 - ''Bacillus subtilis'' <br />
**[[3zq4]] - BsRNase J1 - ''Bacillus subtilis'' <br />
**[[6k6s]] - SeRNase J1 - ''Staphylococcus epidermidis'' <br />
**[[6k6s]] - SeRNase J1 - ''Staphylococcus epidermidis'' <br />
Line 302: Line 320:
**[[2k3r]]. [[2ki7]] - PfRNase P <br />
**[[2k3r]]. [[2ki7]] - PfRNase P <br />
**[[2ljp]] - EcRNase P <br />
**[[2ljp]] - EcRNase P <br />
 +
**[[7uo0]], [[7uo1]], [[7uo2]], [[7uo5]] - EcRNase P + RNA – Cryo EM<br />
**[[2av5]] - PhRNase P component 2<br />
**[[2av5]] - PhRNase P component 2<br />
**[[1x0t]] - PhRNase P component 4<br />
**[[1x0t]] - PhRNase P component 4<br />
Line 311: Line 330:
**[[7og5]] - RNase P – Cryo EM – ''Halorhodospira halophila''<br />
**[[7og5]] - RNase P – Cryo EM – ''Halorhodospira halophila''<br />
**[[7f3e]] - AaRNase P – cryo EM<br />
**[[7f3e]] - AaRNase P – cryo EM<br />
 +
 +
**[[7e8j]], [[7e8k]] - RNase P - ''Thermococcus celer'' <br />
 +
**[[7e8o]] - RNase P + tRNA-His - ''Planctomyceetes bacterium'' <br />
*RNase PH
*RNase PH
Line 325: Line 347:
**[[3who]] - omRNase PO1 – oyster mushroom <br />
**[[3who]] - omRNase PO1 – oyster mushroom <br />
**[[3wr2]] - omRNase PO1 + nucleotide <br />
**[[3wr2]] - omRNase PO1 + nucleotide <br />
 +
 +
*RNase pop2
 +
 +
**[[4b8a]] - yRNase pop2 + cell division cycle protein 39<br />
 +
**[[4b8c]] - yRNase pop2 + cell division cycle protein 39 + CCR4<br />
*RNase R
*RNase R
Line 335: Line 362:
**[[1bol]] - RNase RH - ''Rhizopus niveus'' <br />
**[[1bol]] - RNase RH - ''Rhizopus niveus'' <br />
 +
 +
*RNase RRP
 +
 +
**[[7tuv]] - RNase RRP - ''Trypanosoma brucei'' <br />
*RNase S
*RNase S
Line 363: Line 394:
**[[1ioo]] - RNase SF11 - ''Nicotiana alata'' <br />
**[[1ioo]] - RNase SF11 - ''Nicotiana alata'' <br />
-
*RNase T
+
*RNase T or exonuclease T or 3’-5’ exonuclease
-
**[[2is3]] - EcRNase T <br />
+
**[[2is3]], [[7t2s]] - EcRNase T <br />
**[[3ngy]] - EcRNase T (mutant)<br />
**[[3ngy]] - EcRNase T (mutant)<br />
**[[3ngz]] - EcRNase T (mutant) + nucleotide<br />
**[[3ngz]] - EcRNase T (mutant) + nucleotide<br />
Line 374: Line 405:
*RNase T1
*RNase T1
 +
**[[5gy6]] - muRNase T1 - mushroom<br />
 +
**[[6ls1]], [[7w05]] - muRNase T1 + nucleotide<br />
**[[1tto]], [[1rn1]], [[1rn4]], [[1rnt]], [[2aad]], [[2aae]] - AoRNase T1 - ''Aspergillus oryzae'' <br />
**[[1tto]], [[1rn1]], [[1rn4]], [[1rnt]], [[2aad]], [[2aae]] - AoRNase T1 - ''Aspergillus oryzae'' <br />
**[[1q9e]], [[1iyy]], [[1i2e]], [[1i2f]], [[1i2g]], [[1i3f]], [[1i3i]], [[1hz1]], [[1fys]], [[1fzu]], [[1ch0]], [[4bir]], [[3bir]], [[5bir]], [[1g02]], [[1hyf]], [[1trp]], [[1trq]], [[2bir]], [[4rnt]], [[5rnt]], [[6rnt]], [[7rnt]], [[8rnt]], [[9rnt]] - AoRNase T1 (mutant)<br />
**[[1q9e]], [[1iyy]], [[1i2e]], [[1i2f]], [[1i2g]], [[1i3f]], [[1i3i]], [[1hz1]], [[1fys]], [[1fzu]], [[1ch0]], [[4bir]], [[3bir]], [[5bir]], [[1g02]], [[1hyf]], [[1trp]], [[1trq]], [[2bir]], [[4rnt]], [[5rnt]], [[6rnt]], [[7rnt]], [[8rnt]], [[9rnt]] - AoRNase T1 (mutant)<br />
Line 380: Line 413:
**[[1lov]], [[1low]], [[1loy]], [[1i0v]], [[1i0x]], [[1b2m]], [[1rhl]], [[1bir]], [[1rgk]], [[1rgl]], [[5hoh]] - AoRNase T1 (mutant) + nucleotide<br />
**[[1lov]], [[1low]], [[1loy]], [[1i0v]], [[1i0x]], [[1b2m]], [[1rhl]], [[1bir]], [[1rgk]], [[1rgl]], [[5hoh]] - AoRNase T1 (mutant) + nucleotide<br />
**[[3rnt]] - AoRNase T1 + V<br />
**[[3rnt]] - AoRNase T1 + V<br />
-
**[[5gy6]] - HeRNase T1 - ''Hericium erinaceus''<br />
 
-
**[[6ls1]] - HeRNase T1 + nucleotide<br />
 
*RNase T2
*RNase T2
Line 399: Line 430:
**[[6wzf]], [[5wz4]] - MtRNase C20<br />
**[[6wzf]], [[5wz4]] - MtRNase C20<br />
**[[5sv2]] - MtRNase C21<br />
**[[5sv2]] - MtRNase C21<br />
 +
**[[7vwo]] - MtRNase C43 + B43<br />
**[[5l6m]], [[5k8j]] - CcRNase C + B<br />
**[[5l6m]], [[5k8j]] - CcRNase C + B<br />
**[[5l6l]] - CcRNase C + B + DNA<br />
**[[5l6l]] - CcRNase C + B + DNA<br />
Line 412: Line 444:
**[[2cbn]] - EcRNase Z<br />
**[[2cbn]] - EcRNase Z<br />
-
*RNase ZC3H12A
+
*RNase ZC3H12A or regnase
 +
**[[3v32]], [[3v34]] - hRNase ZC N-terminal domain 112-296<br />
 +
**[[3v33]] - hRNase ZC N-terminal+zinc finger domains 112-334<br />
 +
**[[2n5j]] - mRNase ZC N-terminal domain - NMR<br />
 +
**[[2n5l]] - mRNase ZC C-terminal domain 544-596 - NMR<br />
 +
**[[2n5k]] - mRNase ZC zinc finger domain 299-327 - NMR<br />
**[[5h9v]], [[5h9w]] - mRNase ZC PIN domain<br />
**[[5h9v]], [[5h9w]] - mRNase ZC PIN domain<br />
Line 424: Line 461:
**[[6rci]] - hORNase <br />
**[[6rci]] - hORNase <br />
-
**[[6j7y]], [[6j7z]], [[6j80]], [[6rcn]] - hORNase + DNA<br />
 
-
**[[6rcl]], [[6sty]] - hORNase + RNA<br />
 
**[[2igi]], [[1yta]] - EcORNase<br />
**[[2igi]], [[1yta]] - EcORNase<br />
**[[2gbz]] - ORNase - ''Xanthomonas campestris''<br />
**[[2gbz]] - ORNase - ''Xanthomonas campestris''<br />
**[[1j9a]] - HiORNase - ''Haemophilus influenza''<br />
**[[1j9a]] - HiORNase - ''Haemophilus influenza''<br />
-
**[[6nkl]] - HiORNase + VAPB1<br />
 
**[[3tr8]] - CbORNase - ''Coxiella burnetii''<br />
**[[3tr8]] - CbORNase - ''Coxiella burnetii''<br />
**[[5cy4]] - AbORNase - ''Acinetobacter baumannii''<br />
**[[5cy4]] - AbORNase - ''Acinetobacter baumannii''<br />
**[[7v5h]] - VcORNase <br />
**[[7v5h]] - VcORNase <br />
 +
**[[6a4a]] - CpORNase – Colwella psychreythraea<br />
 +
**[[6rk6]] - ORNase - metagenome<br />
 +
**[[7v9z]] - PaORNase <br />
 +
**[[7wik]] - MsORNase - ''Mycobcterium smegmatis''<br />
 +
**[[7vh4]] - EcORNase <br />
 +
 +
*Oligoribonuclease complex
 +
 +
**[[6j7y]], [[6j7z]], [[6j80]], [[6rcn]] - hORNase + DNA<br />
 +
**[[6rcl]], [[6sty]] - hORNase + RNA<br />
 +
**[[6nkl]] - HiORNase + VAPB1<br />
**[[6n6a]], [[6n6c]], [[6n6d]], [[6n6e]], [[6n6f]], [[6n6g]], [[6n6h]], [[6n6i]], [[6n6j]], [[6n6k]] - VcORNase + RNA<br />
**[[6n6a]], [[6n6c]], [[6n6d]], [[6n6e]], [[6n6f]], [[6n6g]], [[6n6h]], [[6n6i]], [[6n6j]], [[6n6k]] - VcORNase + RNA<br />
-
**[[6a4a]] - CpORNase – ''Colwella psychreythraea''<br />
 
**[[6a4e]] - CpORNase (mutant) + RNA <br />
**[[6a4e]] - CpORNase (mutant) + RNA <br />
**[[6a4d]] - CpORNase (mutant) + PNP-TMP<br />
**[[6a4d]] - CpORNase (mutant) + PNP-TMP<br />
**[[6a4f]] - CpORNase + UMP<br />
**[[6a4f]] - CpORNase + UMP<br />
-
**[[6rk6]] - ORNase - metagenome<br />
+
**[[7va3]], [[7va6]] - PaORNase (mutant) + RNA <br />
 +
**[[7va2]] - PaORNase (mutant) + GMP <br />
*NanoRNase or bifunctional oligoribonuclease and PAP phosphatase nRNA
*NanoRNase or bifunctional oligoribonuclease and PAP phosphatase nRNA
Line 452: Line 497:
*Polynucleotide phosphorylase or Polyribonucleotide nucleotidyltransferase
*Polynucleotide phosphorylase or Polyribonucleotide nucleotidyltransferase
 +
**[[3u1k]], [[5zf6]] - hPNPase<br />
**[[3cdi]], [[7ogl]] - EcPNPase<br />
**[[3cdi]], [[7ogl]] - EcPNPase<br />
**[[3gll]] - EcPNPase core<br />
**[[3gll]] - EcPNPase core<br />
Line 462: Line 508:
**[[3h36]] - PNPase fragment - ''Streptomyces mutans''<br />
**[[3h36]] - PNPase fragment - ''Streptomyces mutans''<br />
**[[4nbq]] - CbPNPase<br />
**[[4nbq]] - CbPNPase<br />
-
**[[4am3]] - PNPase + RNA - ''Caulobacter vibrioides''<br />
+
**[[4am3]] - CvPNPase + RNA - ''Caulobacter vibrioides''<br />
-
**[[7ld5]] - PNPase + RNA - ''Mycobcterium smegmatis''<br />
+
**[[4aid]], [[4aim]] - CvPNPase + RNAse E peptide <br />
 +
**[[7ld5]] - MsPNPase + RNA <br />
**[[6d6k]] - AbPNPase<br />
**[[6d6k]] - AbPNPase<br />
 +
**[[5yjj]] - SePNPase<br />
 +
**[[5xex]] – SaPNPase catalytic domain<br />
*Binase
*Binase

Current revision

3D Structures of Ribonuclease

Updated on 18-October-2023

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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