Journal:Acta Cryst D:S2059798322002157
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The ''Kl''Nmd4 protein is made of a three layered ๐ผ/ฮฒ/๐ผ core consisting in a central five stranded parallel ฮฒ-sheet surrounded by six ๐ผ-helices (๐ผ1 to ๐ผ4, ๐ผ10 and ๐ผ11) on one side and five (๐ผ5 to ๐ผ9) on the other side. <scene name='90/905553/Cv/4'>Ribbon representation of the KlNmd4 crystal structure</scene> colored from its N-terminal (blue) to its C-terminal (red) extremities. | The ''Kl''Nmd4 protein is made of a three layered ๐ผ/ฮฒ/๐ผ core consisting in a central five stranded parallel ฮฒ-sheet surrounded by six ๐ผ-helices (๐ผ1 to ๐ผ4, ๐ผ10 and ๐ผ11) on one side and five (๐ผ5 to ๐ผ9) on the other side. <scene name='90/905553/Cv/4'>Ribbon representation of the KlNmd4 crystal structure</scene> colored from its N-terminal (blue) to its C-terminal (red) extremities. | ||
| - | <scene name='90/905553/Cv/ | + | <scene name='90/905553/Cv/8'>Superposition of the full-length KlNmd4 AlphaFold model onto the KlNmd4 crystal structure</scene> (beige). The full-length KlNmd4 AlphaFold model is colored according to the pLDDT values: |
| + | *pLDDT > 90 <span class="text-blue">'''blue'''</span> | ||
| + | *70 < pLDDT < 90 <span class="bg-lightcyan">cyan</span> | ||
| + | *50 < pLDDT < 70 <span class="bg-yellow">yellow</span> | ||
| + | *pLDDT < 50 <span class="bg-orange">orange</span> | ||
| + | The region 81-114 from the KlNmd4 crystal structure is highlighted in <span class="bg-pink">pink</span>. | ||
| + | |||
| + | Morph representing superposition of the full-length KlNmd4 AlphaFold model onto the KlNmd4 crystal structure: | ||
| + | *1) <scene name='90/905553/Cv/9'>KlNmd4 crystal structure</scene> in <span class="bg-lightgreen">green</span>. | ||
| + | *2) <scene name='90/905553/Cv/10'>KlNmd4 AlphaFold model</scene> in <span class="text-red">'''red'''</span>. | ||
| + | *3) <scene name='90/905553/Cv/11'>Superposition of the full-length KlNmd4 AlphaFold model onto the KlNmd4 crystal structure</scene>. | ||
| + | <jmol><jmolButton> | ||
| + | <script>if (_animating); anim pause;set echo bottom left; color echo white; font echo 20 sansserif;echo Animation Paused; else; anim resume; set echo off;endif;</script> | ||
| + | <text>Click here to Stop Animation before next scene.</text> | ||
| + | </jmolButton></jmol> | ||
| + | *4) <scene name='90/905553/Cv/12'>This scene without animation</scene>. | ||
| + | |||
| + | '''PDB reference:''' ''Kluyveromyces lactis'' Nmd4, [[7qhy]]. | ||
<b>References</b><br> | <b>References</b><br> | ||
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This page complements a publication in scientific journals and is one of the Proteopedia's Interactive 3D Complement pages. For aditional details please see I3DC.
