This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Anna Pressel/Sandbox1
From Proteopedia
< User:Anna Pressel(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | + | <StructureSection load='6wv4' size='350' frame='true' side='right' caption='VKOR 6wv4' scene='<Vkor_with_cap_domain/1'>VKOR Cap Domain</scene>'> | |
| - | <StructureSection load=' | + | |
This is a default text for your page '''Anna Pressel/Sandbox1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page '''Anna Pressel/Sandbox1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
| Line 6: | Line 5: | ||
==Introduction== | ==Introduction== | ||
| + | [[Image:VKOR_Open_Conformation.png|400px|right|thumb|Figure 1]] | ||
| + | <ref name="Liu">PMID:33154105</ref> | ||
== Function == | == Function == | ||
| - | + | <ref name="Ransey">PMID:28504306</ref> | |
[https://proteopedia.org/wiki/index.php/6wvi VKOR Pufferfish Model] | [https://proteopedia.org/wiki/index.php/6wvi VKOR Pufferfish Model] | ||
== Disease == | == Disease == | ||
| Line 14: | Line 15: | ||
== Structural highlights == | == Structural highlights == | ||
| - | + | <scene name='90/905590/Vkor_with_cap_domain/1'>VKOR Cap Domain</scene>=''Vitamin K Epoxide Reductase''= | |
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
Current revision
| |||||||||||
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
- ↑ Liu S, Li S, Shen G, Sukumar N, Krezel AM, Li W. Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science. 2020 Nov 5. pii: science.abc5667. doi: 10.1126/science.abc5667. PMID:33154105 doi:http://dx.doi.org/10.1126/science.abc5667
- ↑ Ransey E, Paredes E, Dey SK, Das SR, Heroux A, Macbeth MR. Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn(2+) /Mn(2+) heterobinucleation. FEBS Lett. 2017 Jul;591(13):2003-2010. doi: 10.1002/1873-3468.12677. Epub 2017, Jun 14. PMID:28504306 doi:http://dx.doi.org/10.1002/1873-3468.12677
Student Contributors
- Anna Pressel
- George Pappadeas
