This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hdq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3hdq' size='340' side='right'caption='[[3hdq]], [[Resolution|resolution]] 2.36&Aring;' scene=''>
<StructureSection load='3hdq' size='340' side='right'caption='[[3hdq]], [[Resolution|resolution]] 2.36&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hdq]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HDQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hdq]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HDQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.36&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DR_A0367, DR_AO367 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 "Micrococcus radiodurans" Raj et al. 1960])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UDP-galactopyranose_mutase UDP-galactopyranose mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.9 5.4.99.9] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hdq OCA], [https://pdbe.org/3hdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hdq RCSB], [https://www.ebi.ac.uk/pdbsum/3hdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hdq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hdq OCA], [https://pdbe.org/3hdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hdq RCSB], [https://www.ebi.ac.uk/pdbsum/3hdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hdq ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9RYF1_DEIRA Q9RYF1_DEIRA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcus radiodurans raj et al. 1960]]
+
[[Category: Deinococcus radiodurans]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: UDP-galactopyranose mutase]]
+
[[Category: Partha SK]]
-
[[Category: Partha, S K]]
+
[[Category: Sanders DA]]
-
[[Category: Sanders, D A]]
+
[[Category: Van Straaten KE]]
-
[[Category: Straaten, K E.van]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Substrate and inhibitor]]
+
-
[[Category: Udp-galactopyranose mutase]]
+

Current revision

Crystal structure of UDP-galactopyranose mutase (oxidized form) in complex with substrate

PDB ID 3hdq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools