7xe1
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 7xe1 is ON HOLD Authors: Niwa, H., Sato, S., Umehara, T. Description: Crystal structure of LSD2 in complex with compound 1c [[Category: Unreleased ...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of LSD2 in complex with compound 1c== | |
| + | <StructureSection load='7xe1' size='340' side='right'caption='[[7xe1]], [[Resolution|resolution]] 2.07Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[7xe1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XE1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XE1 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DIJ:3-(4-bromophenyl)propanal'>DIJ</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xe1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xe1 OCA], [https://pdbe.org/7xe1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xe1 RCSB], [https://www.ebi.ac.uk/pdbsum/7xe1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xe1 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/KDM1B_HUMAN KDM1B_HUMAN] Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4 (By similarity). | ||
| - | + | ==See Also== | |
| - | + | *[[Lysine-specific histone demethylase 3D structures|Lysine-specific histone demethylase 3D structures]] | |
| - | + | __TOC__ | |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: Niwa | + | [[Category: Homo sapiens]] |
| - | [[Category: Sato | + | [[Category: Large Structures]] |
| - | [[Category: Umehara | + | [[Category: Niwa H]] |
| + | [[Category: Sato S]] | ||
| + | [[Category: Umehara T]] | ||
Current revision
Crystal structure of LSD2 in complex with compound 1c
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