5vpk

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<StructureSection load='5vpk' size='340' side='right'caption='[[5vpk]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='5vpk' size='340' side='right'caption='[[5vpk]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5vpk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dermatophagoides_farinae Dermatophagoides farinae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VPK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5vpk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Dermatophagoides_farinae Dermatophagoides farinae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3d6s 3d6s]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VPK FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[5vpg|5vpg]], [[5vph|5vph]], [[5vpl|5vpl]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vpk OCA], [https://pdbe.org/5vpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vpk RCSB], [https://www.ebi.ac.uk/pdbsum/5vpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vpk ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vpk OCA], [https://pdbe.org/5vpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vpk RCSB], [https://www.ebi.ac.uk/pdbsum/5vpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vpk ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PEPT1_DERFA PEPT1_DERFA] Thiol protease that hydrolyzes proteins, with a preference for Phe or basic residues.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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[[Category: Dermatophagoides farinae]]
[[Category: Dermatophagoides farinae]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chapman, M D]]
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[[Category: Chapman MD]]
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[[Category: Chruszcz, M]]
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[[Category: Chruszcz M]]
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[[Category: Minor, W]]
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[[Category: Minor W]]
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[[Category: Pomes, A]]
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[[Category: Pomes A]]
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[[Category: Vailes, L D]]
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[[Category: Vailes LD]]
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[[Category: Allergen]]
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[[Category: Allergy]]
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[[Category: Dust mite]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase]]
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[[Category: Protease]]
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[[Category: Secreted]]
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[[Category: Thiol protease]]
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[[Category: Zymogen]]
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Current revision

CRYSTAL STRUCTURE OF MITE ALLERGEN DER F 1

PDB ID 5vpk

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