7dck
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<StructureSection load='7dck' size='340' side='right'caption='[[7dck]], [[Resolution|resolution]] 2.34Å' scene=''> | <StructureSection load='7dck' size='340' side='right'caption='[[7dck]], [[Resolution|resolution]] 2.34Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'> | + | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DCK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DCK FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dck OCA], [https://pdbe.org/7dck PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dck RCSB], [https://www.ebi.ac.uk/pdbsum/7dck PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dck ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dck OCA], [https://pdbe.org/7dck PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dck RCSB], [https://www.ebi.ac.uk/pdbsum/7dck PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dck ProSAT]</span></td></tr> | ||
</table> | </table> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Metallo-beta-lactamase (MBL) superfamily proteins have a common alphabeta/betaalpha sandwich fold and perform a variety of functions through metal-mediated catalysis. However, because of the enormous scale of this superfamily, only a small percentage of the proteins belonging to the superfamily have been annotated structurally or functionally to date. Therefore, much remains unknown about the MBL superfamily proteins. Here, TW9814, a hypothetical MBL superfamily protein, was structurally and functionally investigated. Guided by the crystal structure of dimeric TW9814, it was demonstrated that TW9814 functions as a phosphodiesterase (PDE) in the presence of divalent metal ions such as manganese(II) or nickel(II). A docking model between TW9814 and the substrate bis(p-nitrophenyl)phosphate (bpNPP) showed the importance of the dimerization of TW9814 for its bpNPP-hydrolyzing activity and for the interaction between the enzyme and the substrate. TW9814 showed outstanding catalytic efficiency (kcat/Km) under alkaline conditions compared with other PDEs. The activity of TW9814 appears to be regulated through a disulfide bond, which is a feature that is not present in other MBL superfamily members. This study provides a platform for the functional characterization of other hypothetical proteins of the MBL or other superfamilies. | ||
- | + | ==See Also== | |
- | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Cha | + | [[Category: Cha SS]] |
- | [[Category: Heo | + | [[Category: Heo Y]] |
- | [[Category: Lee | + | [[Category: Lee W]] |
- | [[Category: Park | + | [[Category: Park JH]] |
- | [[Category: Park | + | [[Category: Park SB]] |
- | [[Category: Yun | + | [[Category: Yun JH]] |
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Current revision
Crystal structure of phosphodiesterase tw9814
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Categories: Large Structures | Cha SS | Heo Y | Lee W | Park JH | Park SB | Yun JH