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Thioesterase 3D structures

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Current revision (10:10, 18 December 2023) (edit) (undo)
 
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Line 42: Line 42:
**[[2q2b]] – mTE7 C terminal<br />
**[[2q2b]] – mTE7 C terminal<br />
**[[6vfy]] – mTE7 42-367 + acyl-CoA TE hydrolase + CoA<br />
**[[6vfy]] – mTE7 42-367 + acyl-CoA TE hydrolase + CoA<br />
-
**[[1tbu]] – TEI N terminal (peroximal) – yeast<br />
+
**[[1tbu]] – yTEI N terminal (peroximal) – yeast<br />
**[[2pzh]] - TE - ''Helicobacter pylori''<br />
**[[2pzh]] - TE - ''Helicobacter pylori''<br />
**[[3rd7]] – TE – ''Mycobacterium avium''<br />
**[[3rd7]] – TE – ''Mycobacterium avium''<br />
Line 78: Line 78:
**[[2ess]] – TE – ''Bacterioides thetaiotaomicron''<br />
**[[2ess]] – TE – ''Bacterioides thetaiotaomicron''<br />
**[[4gak]] – TE – ''Spirosoma linguale''<br />
**[[4gak]] – TE – ''Spirosoma linguale''<br />
 +
**[[8p8k]] – TE + inhibitor – ''Lemna paucicostata''<br />
*ACP-polyene thioesterase
*ACP-polyene thioesterase
Line 117: Line 118:
* USP 1 or ubiquitin carboxyl-terminal hydrolase 1
* USP 1 or ubiquitin carboxyl-terminal hydrolase 1
 +
**[[8a9j]], [[8a9k]] – hUSP + Ub + WD repeat-containing protein 48 + FACI + FACD2 + DNA – Cryo EM<BR />
**[[7ay1]] – hUSP + Ub + WD repeat-containing protein 48 + FANCI + FANCONI + CEP52 + DNA – Cryo EM<BR />
**[[7ay1]] – hUSP + Ub + WD repeat-containing protein 48 + FANCI + FANCONI + CEP52 + DNA – Cryo EM<BR />
 +
**[[7zh3]] – hUSP + Ub-ribosomal protein L40 – Cryo EM<BR />
 +
**[[7zh4]] – hUSP (mutant) + Ub-ribosomal protein L40 – Cryo EM<BR />
**[[7ay2]] – hUSP (mutant) + Ub + WD repeat-containing protein 48 + allylamine <BR />
**[[7ay2]] – hUSP (mutant) + Ub + WD repeat-containing protein 48 + allylamine <BR />
Line 148: Line 152:
**[[6dxh]], [[6dxt]] – hUSP residues 171-290 + metabolite<BR />
**[[6dxh]], [[6dxt]] – hUSP residues 171-290 + metabolite<BR />
-
*Ubiquitin thioesterase 7; domains - TRAF 63-205; catalytic 207-560; UBL1 537-664; UBL2 665-865
+
*Ubiquitin thioesterase 7 or ubiquitin carboxyl-terminal hydrolase 7; domains - TRAF 63-205; catalytic 207-560; UBL1 537-664; UBL2 665-865
**[[2f1z]], [[5j7t]] – hUSP<br />
**[[2f1z]], [[5j7t]] – hUSP<br />
-
**[[1nb8]], [[4m5w]], [[4m5x]] – hUSP catalytic domain <br />
+
**[[1nb8]], [[4m5w]], [[4m5x]], [[7cm2]] – hUSP catalytic domain <br />
**[[5kyb]] – hUSP catalytic domain (mutant) <br />
**[[5kyb]] – hUSP catalytic domain (mutant) <br />
**[[2kvr]] – hUSP UBL domain - NMR<br />
**[[2kvr]] – hUSP UBL domain - NMR<br />
**[[4pyz]], [[4wph]], [[4wpi]] – hUSP UBL domains 1+2<br />
**[[4pyz]], [[4wph]], [[4wpi]] – hUSP UBL domains 1+2<br />
**[[5fwi]], [[5j7t]] – hUSP catalytic + UBL domains 1+2<br />
**[[5fwi]], [[5j7t]] – hUSP catalytic + UBL domains 1+2<br />
 +
**[[7vij]] – hUSP UBL domains 560-1083<br />
**[[1yze]], [[2f1w]] – hUSP TRAF domain <br />
**[[1yze]], [[2f1w]] – hUSP TRAF domain <br />
**[[2ylm]] – hUSP C terminal domain <br />
**[[2ylm]] – hUSP C terminal domain <br />
Line 166: Line 171:
**[[5jtj]], [[5jtv]] – hUSP catalytic domain + polyubiquitin <br />
**[[5jtj]], [[5jtv]] – hUSP catalytic domain + polyubiquitin <br />
**[[5kyd]], [[5kye]] – hUSP catalytic domain (mutant) + Ub <br />
**[[5kyd]], [[5kye]] – hUSP catalytic domain (mutant) + Ub <br />
-
**[[5whc]], [[5n9r]], [[5n9t]], [[5uqv]], [[5uqx]], [[6f5h]], [[5vsk]], [[5vsb]], [[5vs6]], [[5ngf]], [[5nge]], [[6f5h]], [[7cm2]] – hUSP catalytic domain + inhibitor<br />
+
**[[5whc]], [[5n9r]], [[5n9t]], [[5uqv]], [[5uqx]], [[6f5h]], [[5vsk]], [[5vsb]], [[5vs6]], [[5ngf]], [[5nge]], [[6f5h]], [[7cm2]], [[7xhh]], [[7xhk]], [[7xpy]], [[8d4z]] – hUSP catalytic domain + inhibitor<br />
**[[6vn2]], [[6vn3]], [[6vn4]], [[6vn5]], [[6vn6]] – hUSP catalytic domain + ligand<br />
**[[6vn2]], [[6vn3]], [[6vn4]], [[6vn5]], [[6vn6]] – hUSP catalytic domain + ligand<br />
**[[5kyc]], [[5kyd]], [[5kye]], [[5kyf]] – hUSP catalytic domain (mutant) + polyubiquitin <br />
**[[5kyc]], [[5kyd]], [[5kye]], [[5kyf]] – hUSP catalytic domain (mutant) + polyubiquitin <br />
Line 201: Line 206:
*Ubiquitin thioesterase 9
*Ubiquitin thioesterase 9
 +
**[[7yxx]], [[7yxy]] – hUSP 9x – Cryo EM<br />
**[[5vbd]] – hUSP 9x UBL domain <br />
**[[5vbd]] – hUSP 9x UBL domain <br />
Line 207: Line 213:
**[[4mel]] – hUSP DUSP+UBL domains <br />
**[[4mel]] – hUSP DUSP+UBL domains <br />
**[[5ok6]] – hUSP DUSP+UBL domains + peptide<br />
**[[5ok6]] – hUSP DUSP+UBL domains + peptide<br />
 +
**[[8oyp]] – hUSP 295-489+778-937 (mutant) + polyubiquitin<br />
**[[4mem]] – rUSP DUSP+UBL domains - rat<br />
**[[4mem]] – rUSP DUSP+UBL domains - rat<br />
Line 226: Line 233:
**[[2ayo]] – hUSP catalytic domain + Ub aldehyde<br />
**[[2ayo]] – hUSP catalytic domain + Ub aldehyde<br />
**[[6iin]], [[6iim]], [[6iil]], [[6iik]] – hUSP catalytic domain + inhibitor<br />
**[[6iin]], [[6iim]], [[6iil]], [[6iik]] – hUSP catalytic domain + inhibitor<br />
-
**[[5gjq]] – hUSP in proteasome – Cryo EM<br />
+
**[[5gjq]], [[7w37]], [[7w38]], [[7w39]], [[7w3a]], [[7w3b]], [[7w3c]], [[7w3f]], [[7w3g]], [[7w3i]], [[7w3j]], [[7w3k]], [[7w3m]], [[7w3r]] – hUSP in proteasome – Cryo EM<br />
**[[1wiv]] – AtUSP UBA domain - NMR<br />
**[[1wiv]] – AtUSP UBA domain - NMR<br />
**[[1wgg]] – mUSP N terminal domain - NMR<br />
**[[1wgg]] – mUSP N terminal domain - NMR<br />
Line 277: Line 284:
**[[6h4i]] – hUSP catalytic domain <BR />
**[[6h4i]] – hUSP catalytic domain <BR />
**[[6heh]] – hUSP catalytic domain (mutant)<BR />
**[[6heh]] – hUSP catalytic domain (mutant)<BR />
 +
**[[8hje]] – hUSP catalytic domain + inhibitor<BR />
**[[6hek]] – hUSP residues 149-703 + Ub <BR />
**[[6hek]] – hUSP residues 149-703 + Ub <BR />
**[[6hei]], [[6h4h]] – hUSP catalytic domain (mutant) + Ub <BR />
**[[6hei]], [[6h4h]] – hUSP catalytic domain (mutant) + Ub <BR />
Line 284: Line 292:
**[[5ohp]] – hUSP (mutant) + diubiquitin <BR />
**[[5ohp]] – hUSP (mutant) + diubiquitin <BR />
**[[5ohk]], [[5ohn]] – hUSP (mutant) + polyubiquitin <BR />
**[[5ohk]], [[5ohn]] – hUSP (mutant) + polyubiquitin <BR />
 +
**[[8d1t]] – hUSP residues 64-178+217-357+432-502 + antibody<BR />
 +
**[[8d0a]] – hUSP residues 64-178+217-357+432-502 + antibody + inhibitor<BR />
*Ubiquitin thioesterase 33
*Ubiquitin thioesterase 33
**[[2uzg]] – hUSP zinc finger domain - NMR <BR />
**[[2uzg]] – hUSP zinc finger domain - NMR <BR />
 +
 +
*USP 34 or ubiquitin carboxyl-terminal hydrolase 34
 +
 +
**[[7w3u]] – hUSP catalytic domain 1889-2272 + polyubiquitin <BR />
*Ubiquitin thioesterase 35
*Ubiquitin thioesterase 35
**[[5txk]] – hUSP (mutant) + polyubiquitin <BR />
**[[5txk]] – hUSP (mutant) + polyubiquitin <BR />
 +
 +
*USP 36
 +
 +
**[[8bs3]] – hUSP + ribosomal protein S30<BR />
 +
**[[8bs9]] – hUSP + polyubiquitin<BR />
*Ubiquitin thioesterase 37
*Ubiquitin thioesterase 37
Line 313: Line 332:
**[[2vhf]] – hUSP USP domain 537-664<BR />
**[[2vhf]] – hUSP USP domain 537-664<BR />
**[[7owd]] – hUSP CAP-Gly3 domain 467-552 + ubiquitin<BR />
**[[7owd]] – hUSP CAP-Gly3 domain 467-552 + ubiquitin<BR />
 +
**[[7owc]] – hUSP CAP-Gly3 domain + ubiquitin-60S ribosomal protein L40<BR />
*Ubiquitin thioesterase L1
*Ubiquitin thioesterase L1
**[[2etl]] – hUSP-L1 <br />
**[[2etl]] – hUSP-L1 <br />
-
**[[3irt]], [[4jkj]] – hUSP (mutant) <BR />
+
**[[3irt]], [[4jkj]], [[8dy8]] – hUSP (mutant) <BR />
**[[2len]] – hUSP (mutant) - NMR<BR />
**[[2len]] – hUSP (mutant) - NMR<BR />
**[[3ifw]], [[3kvf]], [[3kw5]] – hUSP (mutant) + Ub<BR />
**[[3ifw]], [[3kvf]], [[3kw5]] – hUSP (mutant) + Ub<BR />
**[[4dm9]] – hUSP + peptide inhibitor<BR />
**[[4dm9]] – hUSP + peptide inhibitor<BR />
 +
**[[8ede]] – hUSP + inhibitor<BR />
 +
**[[7zm0]] – hUSP (mutant) + inhibitor<BR />
 +
*Ubiquitin thioesterase L3 or UCH-L3
*Ubiquitin thioesterase L3 or UCH-L3
Line 327: Line 350:
**[[1xd3]] – hUSP-L3 + UBC<br />
**[[1xd3]] – hUSP-L3 + UBC<br />
**[[6isu]], [[6qml]] – hUSP-L3 + Ub <br />
**[[6isu]], [[6qml]] – hUSP-L3 + Ub <br />
 +
**[[7yv4]] – hUSP-L3 + farrerol<br />
**[[2we6]] – PfUSP-L3 – ''Plasmodium falciparum''<br />
**[[2we6]] – PfUSP-L3 – ''Plasmodium falciparum''<br />
**[[2wdt]] – PfUSP-L3 + Ub <br />
**[[2wdt]] – PfUSP-L3 + Ub <br />
Line 386: Line 410:
**[[4qda]], [[4qdb]] – PaTE hotdog domain (mutant)<br />
**[[4qda]], [[4qdb]] – PaTE hotdog domain (mutant)<br />
**[[4qd8]], [[4dq9]] – PaTE hotdog domain + acyl-CoA derivatives<br />
**[[4qd8]], [[4dq9]] – PaTE hotdog domain + acyl-CoA derivatives<br />
 +
 +
*2-aminobenzoylacetyl-CoA TE
 +
 +
**[[7r3j]], [[8b4a]] – PaTE + regulatory protein RhlR<br />
 +
**[[8dq0]] – PaTE + regulatory protein RhlR – Cryo EM<br />
 +
**[[8dq1]] – PaTE + regulatory protein RhlR + DNA – Cryo EM<br />
 +
**[[7r3e]] – PaTE/regulatory protein RhlR + antagonist<br />
 +
**[[7kgx]] – PaTE + inhibitor<br />
*Thioesterase
*Thioesterase
 +
**[[7d78]] – TE – fungus<br />
 +
**[[7en4]] – yTE - NMR<br />
**[[5vpj]] – TE – ''Actinomadura verrucosospora''<br />
**[[5vpj]] – TE – ''Actinomadura verrucosospora''<br />
**[[5dio]], [[5byu]] – TE – ''Legionella pneumophila''<br />
**[[5dio]], [[5byu]] – TE – ''Legionella pneumophila''<br />
**[[6fvj]] – TE – ''Mycobacterium tuberculosis''<br />
**[[6fvj]] – TE – ''Mycobacterium tuberculosis''<br />
-
**[[6vap]] – TE – ''Streptomyces'' <br />
+
**[[6vap]], [[7e32]] – TE – ''Streptomyces'' <br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Updated on 18-December-2023 - For a general description of the protein see Thioesterase


Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky, Joel L. Sussman

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