User:Meghan Pemberton/Sandbox 1
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==Brain-Derived Neurotrophic Factor== | ==Brain-Derived Neurotrophic Factor== | ||
- | <StructureSection load='1bnd' size='340' side='right' caption=' | + | <StructureSection load='1bnd' size='340' side='right' caption='3D structure of Brain-Derived Neurotrophic Factor' scene=''> |
This is a default text for your page '''Meghan Pemberton/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | This is a default text for your page '''Meghan Pemberton/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
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== Background == | == Background == | ||
Brain-derived neurotrophic factor, or BDNF for short, is a protein in humans that is expressed primarily in areas of the brain such as the hippocampus, basal forebrain, hypothalamus, brainstem, and spinal cord <ref name="Bathina-2015">DOI 10.5114/aoms.2015.56342</ref>. It is also expressed in the lungs, heart, spleen, gastrointestinal tract, liver, fibroblasts, and vascular tissue <ref name="Bathina-2015" />. The protein is encoded by the BDNF gene located on human chromosome 11 <ref name="Binder-2004">DOI 10.1080/08977190410001723308</ref>. It belongs to the family of neurotrophins, which in general, are proteins that are important in neuronal survival, development, function, and brain plasticity. It was first expected to only be responsible for neurogenesis—the growth and development of new neurons within the central nervous system <ref name="Martin-2000">DOI 10.1038/sj.npp.1301571</ref>. However, it’s now widely believed that the main function is to regulate synaptic plasticity <ref name="Martin-2000" />. Synaptic plasticity is induced during memory formation and is necessary for information storage, so BDNF is important in learning, memory, and higher thinking <ref>DOI 10.1146/annurev.neuro.23.1.649</ref>. | Brain-derived neurotrophic factor, or BDNF for short, is a protein in humans that is expressed primarily in areas of the brain such as the hippocampus, basal forebrain, hypothalamus, brainstem, and spinal cord <ref name="Bathina-2015">DOI 10.5114/aoms.2015.56342</ref>. It is also expressed in the lungs, heart, spleen, gastrointestinal tract, liver, fibroblasts, and vascular tissue <ref name="Bathina-2015" />. The protein is encoded by the BDNF gene located on human chromosome 11 <ref name="Binder-2004">DOI 10.1080/08977190410001723308</ref>. It belongs to the family of neurotrophins, which in general, are proteins that are important in neuronal survival, development, function, and brain plasticity. It was first expected to only be responsible for neurogenesis—the growth and development of new neurons within the central nervous system <ref name="Martin-2000">DOI 10.1038/sj.npp.1301571</ref>. However, it’s now widely believed that the main function is to regulate synaptic plasticity <ref name="Martin-2000" />. Synaptic plasticity is induced during memory formation and is necessary for information storage, so BDNF is important in learning, memory, and higher thinking <ref>DOI 10.1146/annurev.neuro.23.1.649</ref>. | ||
- | BDNF is synthesized in the endoplasmic reticulum <ref name="Bathina-2015" />. It then moves through the Golgi and trans-Golgi network and is cleaved by a protein convertase enzyme to form the biologically active form of the protein that gets sent into secretory vesicles <ref name="Bathina-2015" />. Vesicles bind to carboxypeptidase E, an enzyme responsible for the biosynthesis of the protein. Mice have been studied to examine when a disruption in this binding occurs. When there is a disruption in this binding, the ability for cells to sort BDNF greatly decreases. Mice that are born with this problem have significant neuron loss that results in problems affecting balance and coordination, breathing, hearing, and even death, suggesting the protein's role in normal neuronal development <ref>Demetre, D. C. (2009, May 17). What Is Brain-derived Neurotrophic Factor? Sciencebeta. Retrieved April 20, 2022, from https://sciencebeta.com/definition-brain-derived-neurotrophic-factor/ | + | BDNF is synthesized in the endoplasmic reticulum <ref name="Bathina-2015" />. It then moves through the Golgi and trans-Golgi network and is cleaved by a protein convertase enzyme to form the biologically active form of the protein that gets sent into secretory vesicles <ref name="Bathina-2015" />. <scene name='91/911206/Motif/2'>Vesicles</scene> bind to carboxypeptidase E, an enzyme responsible for the biosynthesis of the protein. Mice have been studied to examine when a disruption in this binding occurs. When there is a disruption in this binding, the ability for cells to sort BDNF greatly decreases. Mutations in four amino acid residues may disrupt the binding and sorting. Mice that are born with this problem have significant neuron loss that results in problems affecting balance and coordination, breathing, hearing, and even death, suggesting the protein's role in normal neuronal development <ref>Demetre, D. C. (2009, May 17). What Is Brain-derived Neurotrophic Factor? Sciencebeta. Retrieved April 20, 2022, from https://sciencebeta.com/definition-brain-derived-neurotrophic-factor/ |
</ref>. Many studies have linked BDNF with multiple neurological diseases. Some of these include depression, Alzheimer’s disease, Huntington’s disease, and multiple sclerosis. In neurodegenerative diseases, BDNF levels are decreased. In addition to its neurological effects, BDNF plays a large role in homeostasis, specifically energy intake and body weight. | </ref>. Many studies have linked BDNF with multiple neurological diseases. Some of these include depression, Alzheimer’s disease, Huntington’s disease, and multiple sclerosis. In neurodegenerative diseases, BDNF levels are decreased. In addition to its neurological effects, BDNF plays a large role in homeostasis, specifically energy intake and body weight. | ||
- | Studies have also shown that physical activity can increase levels of brain BDNF. The positive benefits that exercise has on brain health and function are primarily due to optimizing BDNF levels, particularly in the hippocampus | + | Studies have also shown that physical activity can increase levels of brain BDNF. The positive benefits that exercise has on brain health and function are primarily due to optimizing BDNF levels, particularly in the hippocampus <ref name="Phil-2017">DOI 10.1155/2017/7260130</ref>. Rodents exposed to physical activity five days a week for four weeks demonstrate an increase in BDNF synthesis and release <ref name="Phil-2017" />. In addition, exercise that includes endurance training induces the expression of muscle-derived proteins that upregulate BDNF expression. |
== Structure == | == Structure == | ||
- | Brain-derived neurotrophic factor is a relatively small protein, only 27.48 kDa, made of 119 amino acid residues <ref name="Bank">Bank, R. P. D. (n.d.). 3D View: 1B8M. Protein Data Bank. Retrieved April 18, 2022, from https://www.rcsb.org/3d-view/1B8M</ref>. The secondary structure of the protein is primarily beta-sheets with only a small number of alpha-helices <ref name="Bank" />. The protein is a non-covalently linked heterodimer and has close structural homology to nerve growth factor (NGF) proteins <ref name="Binder-2004" />. BDNF contains a cysteine knot motif, indicating its importance in neurogenesis. | + | Brain-derived neurotrophic factor is a relatively small protein, only 27.48 kDa, made of 119 amino acid residues <ref name="Bank">Bank, R. P. D. (n.d.). 3D View: 1B8M. Protein Data Bank. Retrieved April 18, 2022, from https://www.rcsb.org/3d-view/1B8M</ref>. The secondary structure of the protein is primarily beta-sheets with only a small number of alpha-helices <ref name="Bank" />. The protein is a non-covalently linked heterodimer and has close structural homology to nerve growth factor (NGF) proteins <ref name="Binder-2004" />. BDNF contains a <scene name='91/911206/Cysteine_knot/2'>cysteine</scene> knot motif, indicating its importance in neurogenesis. |
- | There are a few single-nucleotide polymorphisms (SNPs) of BDNF. The most commonly studied one is Val66Met and is exclusive to humans. This point mutation occurs at position 196 (or amino acid residue 66) and mutates a guanine to adenine. Upon transcription, this mutation causes an amino acid switch of valine to methionine. This polymorphism plays a role in destabilizing the mRNA transcript, leading to premature degradation <ref>DOI 10.3389/fnins.2013.00188</ref>. The protein that is able to be translated is not trafficked or secreted sufficiently. It can potentially alter protein-protein interactions, binding affinities, localisation, or conformational stability of the protein <ref name="Nociti-2020">DOI 10.20517/2347-8659.2020.25</ref>. Those with this deficit show a decline in short-term episodic memory along with abnormal activity in the hippocampus <ref name="Martin-2000" />. This mutation is also associated with major depressive disorder <ref name="Martin-2000" />. | + | There are a few single-nucleotide polymorphisms (SNPs) of BDNF. The most commonly studied one is <scene name='91/911206/Val66met/3'>Val66Met</scene> and is exclusive to humans. This point mutation occurs at position 196 (or amino acid residue 66) and mutates a guanine to adenine. Upon transcription, this mutation causes an amino acid switch of valine to methionine. This polymorphism plays a role in destabilizing the mRNA transcript, leading to premature degradation <ref>DOI 10.3389/fnins.2013.00188</ref>. The protein that is able to be translated is not trafficked or secreted sufficiently. It can potentially alter protein-protein interactions, binding affinities, localisation, or conformational stability of the protein <ref name="Nociti-2020">DOI 10.20517/2347-8659.2020.25</ref>. Those with this deficit show a decline in short-term episodic memory along with abnormal activity in the hippocampus <ref name="Martin-2000" />. This mutation is also associated with major depressive disorder <ref name="Martin-2000" />. |
== Functions == | == Functions == | ||
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<i>Alzheimer’s Disease</i> | <i>Alzheimer’s Disease</i> | ||
<br/> | <br/> | ||
- | Decreased mRNA and protein levels of BDNF have been examined in AD patients. Some evidence has shown that amyloid-β protein plays a direct role in inhibiting the formation of BDNF, reducing its levels in the brain | + | Decreased mRNA and protein levels of BDNF have been examined in AD patients. Some evidence has shown that amyloid-β protein plays a direct role in inhibiting the formation of BDNF, reducing its levels in the brain <ref>DOI 10.1016/j.nbd.2016.05.008</ref>. In an Alzheimer’s Disease brain, abnormal amyloid-β protein levels occur and clump together to form plaques. The direct connections between BDNF and Alzheimer’s Disease are still unclear, however, the formation of plaques may greatly decrease the formation of BDNF. |
<br/> | <br/> | ||
<i>Multiple Sclerosis</i> | <i>Multiple Sclerosis</i> | ||
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Brain-derived neurotrophic factor appears to contribute to many systems and processes within the human body. Its role in neurodegenerative and neuropsychiatric disorders appears to be very promising, as additional research needs to be done. A decrease in protein expression is seen in many neurological disorders such as Alzheimer’s Disease, as detailed above, as well as Parkinson’s Disease and Huntington’s Disease. Physical exercise, especially endurance training, increases BDNF levels, improving symptoms related to depression. BDNF appears to potentially prevent Type 2 Diabetes due to its role in energy intake and body weight. However, therapeutic approaches regarding BDNF and Type 2 Diabetes prevention and management remain uncertain. Further studies that examine other neurotrophins on their metabolic effects, synaptic plasticity, and neural survival are crucial to understand the pathogenesis of BDNF in depth. | Brain-derived neurotrophic factor appears to contribute to many systems and processes within the human body. Its role in neurodegenerative and neuropsychiatric disorders appears to be very promising, as additional research needs to be done. A decrease in protein expression is seen in many neurological disorders such as Alzheimer’s Disease, as detailed above, as well as Parkinson’s Disease and Huntington’s Disease. Physical exercise, especially endurance training, increases BDNF levels, improving symptoms related to depression. BDNF appears to potentially prevent Type 2 Diabetes due to its role in energy intake and body weight. However, therapeutic approaches regarding BDNF and Type 2 Diabetes prevention and management remain uncertain. Further studies that examine other neurotrophins on their metabolic effects, synaptic plasticity, and neural survival are crucial to understand the pathogenesis of BDNF in depth. | ||
- | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
</StructureSection> | </StructureSection> | ||
== References == | == References == | ||
<references/> | <references/> |
Current revision
Brain-Derived Neurotrophic Factor
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References
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Bathina S, Das UN. Brain-derived neurotrophic factor and its clinical implications. Arch Med Sci. 2015 Dec 10;11(6):1164-78. doi: 10.5114/aoms.2015.56342. Epub 2015 , Dec 11. PMID:26788077 doi:http://dx.doi.org/10.5114/aoms.2015.56342
- ↑ 2.0 2.1 Binder DK, Scharfman HE. Brain-derived neurotrophic factor. Growth Factors. 2004 Sep;22(3):123-31. doi: 10.1080/08977190410001723308. PMID:15518235 doi:http://dx.doi.org/10.1080/08977190410001723308
- ↑ 3.0 3.1 3.2 3.3 3.4 Martinowich K, Lu B. Interaction between BDNF and serotonin: role in mood disorders. Neuropsychopharmacology. 2008 Jan;33(1):73-83. doi: 10.1038/sj.npp.1301571. Epub , 2007 Sep 19. PMID:17882234 doi:http://dx.doi.org/10.1038/sj.npp.1301571
- ↑ Martin SJ, Grimwood PD, Morris RG. Synaptic plasticity and memory: an evaluation of the hypothesis. Annu Rev Neurosci. 2000;23:649-711. doi: 10.1146/annurev.neuro.23.1.649. PMID:10845078 doi:http://dx.doi.org/10.1146/annurev.neuro.23.1.649
- ↑ Demetre, D. C. (2009, May 17). What Is Brain-derived Neurotrophic Factor? Sciencebeta. Retrieved April 20, 2022, from https://sciencebeta.com/definition-brain-derived-neurotrophic-factor/
- ↑ 6.0 6.1 Phillips C. Brain-Derived Neurotrophic Factor, Depression, and Physical Activity: Making the Neuroplastic Connection. Neural Plast. 2017;2017:7260130. doi: 10.1155/2017/7260130. Epub 2017 Aug 8. PMID:28928987 doi:http://dx.doi.org/10.1155/2017/7260130
- ↑ 7.0 7.1 Bank, R. P. D. (n.d.). 3D View: 1B8M. Protein Data Bank. Retrieved April 18, 2022, from https://www.rcsb.org/3d-view/1B8M
- ↑ Baj G, Carlino D, Gardossi L, Tongiorgi E. Toward a unified biological hypothesis for the BDNF Val66Met-associated memory deficits in humans: a model of impaired dendritic mRNA trafficking. Front Neurosci. 2013 Oct 30;7:188. doi: 10.3389/fnins.2013.00188. PMID:24198753 doi:http://dx.doi.org/10.3389/fnins.2013.00188
- ↑ 9.0 9.1 9.2 9.3 9.4 doi: https://dx.doi.org/10.20517/2347-8659.2020.25
- ↑ 10.0 10.1 Anand KS, Dhikav V. Hippocampus in health and disease: An overview. Ann Indian Acad Neurol. 2012 Oct;15(4):239-46. doi: 10.4103/0972-2327.104323. PMID:23349586 doi:http://dx.doi.org/10.4103/0972-2327.104323
- ↑ Lynch G, Rex CS, Gall CM. Synaptic plasticity in early aging. Ageing Res Rev. 2006 Aug;5(3):255-80. doi: 10.1016/j.arr.2006.03.008. Epub 2006, Aug 28. PMID:16935034 doi:http://dx.doi.org/10.1016/j.arr.2006.03.008
- ↑ Tanila H. The role of BDNF in Alzheimer's disease. Neurobiol Dis. 2017 Jan;97(Pt B):114-118. doi: 10.1016/j.nbd.2016.05.008. Epub, 2016 May 13. PMID:27185594 doi:http://dx.doi.org/10.1016/j.nbd.2016.05.008