Transcriptional activator 3D structures

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:13, 1 January 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 77: Line 77:
**[[2i8b]] – TA C terminal – Zaire ebolavirus<br />
**[[2i8b]] – TA C terminal – Zaire ebolavirus<br />
**[[3v7o]] – TA C terminal – Reston ebolavirus<br />
**[[3v7o]] – TA C terminal – Reston ebolavirus<br />
- 
*Flagelar TA
*Flagelar TA
Line 153: Line 152:
**[[6uue]], [[6utc]] – VvTA <br />
**[[6uue]], [[6utc]] – VvTA <br />
**[[7nmb]], [[7nn6]] – VcTA - NMR<br />
**[[7nmb]], [[7nn6]] – VcTA - NMR<br />
 +
**[[8b4b]], [[8b4c]], [[8b4d]], [[8b4e]] – VcTA + DNA<br />
 +
**[[8alo]] – VcTA + ToxS<br />
*LysR TA
*LysR TA
Line 226: Line 227:
**[[2g7s]] – AtTA <br />
**[[2g7s]] – AtTA <br />
**[[3gzi]] – TA – ''Shewanella loihica''<br />
**[[3gzi]] – TA – ''Shewanella loihica''<br />
-
**[[2qib]], [[2zcx]], [[6srm]] – ScTA – ''Streptomyces coelicolor''<br />
+
**[[2qib]], [[2zcx]], [[7ky1]] – ScTA – ''Streptomyces coelicolor''<br />
**[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br />
**[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br />
**[[3cdl]] – PsTA – ''Pseudomonas syringae''<br />
**[[3cdl]] – PsTA – ''Pseudomonas syringae''<br />
Line 283: Line 284:
*MarR family TA or multiple antibiotic resistance protein
*MarR family TA or multiple antibiotic resistance protein
-
**[[3boq]], [[3cjn]], [[3e6m]] – RpTA - Ruegeria pomeryi<br />
+
**[[3boq]], [[3cjn]], [[3e6m]] – RpTA - ''Ruegeria pomeryi''<br />
-
**[[3s2w]] – TA – Methanosarcina mazei <br />
+
**[[3s2w]] – TA – ''Methanosarcina mazei'' <br />
-
**[[3bpv]] – TA – Methanobacterium thermoautotrophicum <br />
+
**[[3bpv]] – TA – ''Methanobacterium thermoautotrophicum'' <br />
-
**[[2fbk]] – DrTA – Deinococcus radiodurans<br />
+
**[[2fbk]] – DrTA –'' Deinococcus radiodurans''<br />
**[[5dd8]] – DrTA (mutant) <br />
**[[5dd8]] – DrTA (mutant) <br />
-
**[[2fa5]] – TA – Xanthomonas campestris<br />
+
**[[2fa5]] – TA – ''Xanthomonas campestris''<br />
**[[3g3z]], [[5aiq]] – NmTA <br />
**[[3g3z]], [[5aiq]] – NmTA <br />
**[[5aip]] – NmTA + hydroxyphenylacetate <br />
**[[5aip]] – NmTA + hydroxyphenylacetate <br />
-
**[[5e1w]] – DmTA – Dihalococcoides mccartyi<br />
+
**[[5e1w]] – DmTA – ''Dihalococcoides mccartyi''<br />
**[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative <br />
**[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative <br />
-
**[[6c28]] – RpTA + coumaroyl-CoA – Rhodopseudomonas palustris <br />
+
**[[6c28]] – RpTA + coumaroyl-CoA – ''Rhodopseudomonas palustris'' <br />
**[[3fm5]] – RjTA <br />
**[[3fm5]] – RjTA <br />
**[[1z91]] – BsTA <br />
**[[1z91]] – BsTA <br />
Line 301: Line 302:
**[[3vod]] – EcTA (mutant)<br />
**[[3vod]] – EcTA (mutant)<br />
**[[5h3r]] – EcTA (mutant) + DNA<br />
**[[5h3r]] – EcTA (mutant) + DNA<br />
-
**[[5eri]] – CdTA – Clostridium difficile<br />
+
**[[5eri]] – CdTA – ''Clostridium difficile''<br />
-
**[[7dvn]] – TA + effector – Paenisporosarcina<br />
+
**[[7dvn]] – TA + effector –'' Paenisporosarcina''<br />
-
**[[3u2r]] – TA – Planctopirus limnophilus<br />
+
**[[3u2r]] – TA – ''Planctopirus limnophilus''<br />
-
**[[2rdp]] – TA – Bacillus stearothermophilus<br />
+
**[[2rdp]] – TA – ''Bacillus stearothermophilus''<br />
*MerR family TA or mercuric resistance operon regulatory protein
*MerR family TA or mercuric resistance operon regulatory protein
Line 310: Line 311:
**[[3hh0]] – BcTA <br />
**[[3hh0]] – BcTA <br />
**[[3gpv]] – BtTA <br />
**[[3gpv]] – BtTA <br />
-
**[[4ua1]], [[4ua2]] – TA – Bacillus megaterium<br />
+
**[[4ua1]], [[4ua2]] – TA – ''Bacillus megaterium''<br />
**[[5crl]] – PaTA <br />
**[[5crl]] – PaTA <br />
-
**[[5gpe]] – TA – Cupriavidus metallidurans<br />
+
**[[5gpe]] – TA – ''Cupriavidus metallidurans''<br />
-
**[[3cnb]] – TA – Colwellia psychrerythraea <br />
+
**[[3cnb]] – TA – ''Colwellia psychrerythraea'' <br />
-
**[[6d90]] – HiTA – Haemophilia influenzae<br />
+
**[[6d90]] – HiTA – ''Haemophilia influenzae''<br />
**[[5d8c]] – HiTA + DNA <br />
**[[5d8c]] – HiTA + DNA <br />
**[[6xl6]], [[6xla]], [[6xlk]] – EcTA + DNA – Cryo EM<br />
**[[6xl6]], [[6xla]], [[6xlk]] – EcTA + DNA – Cryo EM<br />
Line 326: Line 327:
*AraC family TA or arabinose operon regulatory protein
*AraC family TA or arabinose operon regulatory protein
-
**[[3gra]] – PpTA – Pseudomonas putida<br />
+
**[[3gra]] – PpTA – ''Pseudomonas putida''<br />
-
**[[3cu5]] – TA – Lacnoclostridium phytofermentans<br />
+
**[[3cu5]] – TA – ''Lacnoclostridium phytofermentans''<br />
**[[5chh]] – PaTA <br />
**[[5chh]] – PaTA <br />
**[[2ara]] – EcTA <br />
**[[2ara]] – EcTA <br />
Line 338: Line 339:
**[[3kjx]], [[3e3m]] – RpTA <br />
**[[3kjx]], [[3e3m]] – RpTA <br />
-
**[[3jy6]] – TA - Lactobacillus brevis <br />
+
**[[3jy6]] – TA - ''Lactobacillus brevis'' <br />
-
**[[6chk]] – LcTA - Lactobacillus casei <br />
+
**[[6chk]] – LcTA - ''Lactobacillus casei'' <br />
**[[4rk5]], [[4rk4]] – LcTA + sugar <br />
**[[4rk5]], [[4rk4]] – LcTA + sugar <br />
**[[4rk0]], [[4rk1]] – EfTA + ribose<br />
**[[4rk0]], [[4rk1]] – EfTA + ribose<br />
**[[3h5t]] – CgTA <br />
**[[3h5t]] – CgTA <br />
**[[3kke]] – MsTA <br />
**[[3kke]] – MsTA <br />
-
**[[4rkq]], [[4rkr]] – TA - Arthrobacter<br />
+
**[[4rkq]], [[4rkr]] – TA - ''Arthrobacter''<br />
*PadR family TA
*PadR family TA
Line 358: Line 359:
*TrmB TA or tRNA (guanine-N(7)-) methyltransferase
*TrmB TA or tRNA (guanine-N(7)-) methyltransferase
-
**[[2f5t]] – TA – Thermococcus litoralis<br />
+
**[[2f5t]] – TA – ''Thermococcus litoralis''<br />
-
**[[3qph]] – PfTA + sucrose – Pyrococcus furiosus<br />
+
**[[3qph]] – PfTA + sucrose – ''Pyrococcus furiosus''<br />
*IclR TA
*IclR TA
Line 366: Line 367:
**[[2o99]], [[2o9a]] – EcTA C-terminal <br />
**[[2o99]], [[2o9a]] – EcTA C-terminal <br />
**[[1td5]] – EcTA LBD <br />
**[[1td5]] – EcTA LBD <br />
-
**[[7cuo]] – TA + hydroxybenzoate – Microbacterium hydrocarbonoxydans <br />
+
**[[7cuo]] – TA + hydroxybenzoate – ''Microbacterium hydrocarbonoxydans <br />
-
 
+
''
*BgaR TA
*BgaR TA
-
**[[6nwo]] – CpTA – Clostridium perfringens<br />
+
**[[6nwo]] – CpTA – ''Clostridium perfringens''<br />
**[[6nx3]], [[6nwj]], [[6nwm]], [[6nwh]] – CpTA + pyranose derivative<br />
**[[6nx3]], [[6nwj]], [[6nwm]], [[6nwh]] – CpTA + pyranose derivative<br />
Line 378: Line 379:
**[[3qpt]] – StTA <br />
**[[3qpt]] – StTA <br />
**[[3q5f]] – StTA + DNA <br />
**[[3q5f]] – StTA + DNA <br />
-
**[[4aih]] – YpTA – Yersinia pseudotuberculosis<br />
+
**[[4aih]] – YpTA – ''Yersinia pseudotuberculosis''<br />
**[[4aij]], [[4aik]] – YpTA + DNA <br />
**[[4aij]], [[4aik]] – YpTA + DNA <br />
*CouR TA
*CouR TA
-
**[[5cyv]], [[6c28]] – RjTA + coumaroyl-CoA – Rhodococcus jostii<br />
+
**[[5cyv]], [[6c28]] – RjTA + coumaroyl-CoA –'' Rhodococcus jostii''<br />
**[[6c9t]] – RpTA <br />
**[[6c9t]] – RpTA <br />
**[[6c2s]] – RpTA + DNA <br />
**[[6c2s]] – RpTA + DNA <br />
Line 407: Line 408:
*LmrR TA
*LmrR TA
-
**[[3f8b]], [[6i8n]] – LlTA – Lactococcus lactis<br />
+
**[[3f8b]], [[6i8n]] – LlTA – ''Lactococcus lactis''<br />
**[[3f8c]], [[3f8f]] – LlTA + drug<br />
**[[3f8c]], [[3f8f]] – LlTA + drug<br />
**[[6vwe]], [[6do0]] – LlTA + Rh complex<br />
**[[6vwe]], [[6do0]] – LlTA + Rh complex<br />
Line 422: Line 423:
*HdfR TA
*HdfR TA
-
**[[6wn5]] – TA – Klebsiella pneumoniae<br />
+
**[[6wn5]] – TA – ''Klebsiella pneumoniae''<br />
*McbR TA
*McbR TA
Line 446: Line 447:
*AraR TA or arabinose metabolism transcriptional repressor
*AraR TA or arabinose metabolism transcriptional repressor
-
**[[5bs6]], [[5dd4]] – BtTA – Bacterioides thetaiotaomicron<br />
+
**[[5bs6]], [[5dd4]] – BtTA – ''Bacterioides thetaiotaomicron''<br />
**[[3tb6]] – BtTA effector-binding domain 71-362 + arabinose<br />
**[[3tb6]] – BtTA effector-binding domain 71-362 + arabinose<br />
**[[5ddg]] – BtTA + DNA<br />
**[[5ddg]] – BtTA + DNA<br />
Line 467: Line 468:
**[[4l4y]] – EcTA <br />
**[[4l4y]] – EcTA <br />
**[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand<br />
**[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand<br />
 +
 +
*TA II
 +
 +
**[[8igr]] – EcTA in transcription activation complex – Cryo EM<br />
 +
 +
*TA RAMA
 +
 +
**[[7bef]], [[7beg]] – EcTA in transcription activation complex – Cryo EM<br />
 +
 +
*PrfA TA or listeriolysin positive regulatory factor A
 +
 +
**[[1omi]], [[2beo]] – LmTA <br />
 +
**[[2bgc]], [[6qvy]], [[6qvz]], [[6qw1]], [[6qw2]] – LmTA (mutant) <br />
 +
**[[5lej]], [[5x6d]] – LmTA + DNA<br />
 +
**[[5lek]], [[6qwf]], [[6qwh]], [[6qwk]], [[6qwm]] – LmTA (mutant) + DNA <br />
 +
**[[5f1r]], [[6eut]], [[6euu]], [[6euz]], [[6ev0]], [[6exk]], [[6exl]], [[6exm]], [[6t5i]] – LmTA + inhibitor<br />
 +
**[[5lrs]], [[5x6e]] – LmTA + DNA + glutathione<br />
 +
**[[5lrr]] – LmTA + glutathione<br />
 +
**[[6hck]] – LmTA + peptide<br />
*HTH-type TA or helix-turn-helix-type
*HTH-type TA or helix-turn-helix-type
Line 473: Line 493:
**[[2uxh]] – PpTA TtgR + quercetin<br />
**[[2uxh]] – PpTA TtgR + quercetin<br />
**[[2uxi]] – PpTA TtgR + phloretin<br />
**[[2uxi]] – PpTA TtgR + phloretin<br />
-
**[[6ugl]], [[6kju]] – VcTA + pyrazine derivative<br />
+
**[[6ugl]], [[6kju]] – VcTA + pyrazine derivative<''br />
-
**[[2bv6]] – SaTA MgrA – Staphylococcus aureus<br />
+
**[[2bv6]] – SaTA MgrA –'' Staphylococcus aureus<br />
**[[5hs5]], [[5ywj]], [[6k8e]] – SaTA SarX<br />
**[[5hs5]], [[5ywj]], [[6k8e]] – SaTA SarX<br />
**[[3hrm]], [[3hse]] – SaTA SarZ <br />
**[[3hrm]], [[3hse]] – SaTA SarZ <br />
Line 486: Line 506:
**[[2hxr]] – EcTA CynR LBD <br />
**[[2hxr]] – EcTA CynR LBD <br />
**[[3hfu]] – EcTA CynR LBD + N3<br />
**[[3hfu]] – EcTA CynR LBD + N3<br />
 +
**[[8bob]] – EcTA MalT + MalY – Cryo EM <br />
**[[2gfn]] – RjTA Rha1 <br />
**[[2gfn]] – RjTA Rha1 <br />
**[[1i1g]] – PfTA LrpA <br />
**[[1i1g]] – PfTA LrpA <br />
-
**[[7cla]] – TA SkgA – Caulobacter vibrioides<br />
+
**[[7cla]] – TA SkgA – ''Caulobacter vibrioides''<br />
**[[7bzd]] – BsTA HxlR <br />
**[[7bzd]] – BsTA HxlR <br />
**[[7bze]] – BsTA HxlR (mutant)<br />
**[[7bze]] – BsTA HxlR (mutant)<br />
**[[7bzg]] – BsTA HxlR + DNA<br />
**[[7bzg]] – BsTA HxlR + DNA<br />
-
**[[7amn]], [[7amt]] – TA LuxR + DNA – Vibrio alginolyticus<br />
+
**[[7amn]], [[7amt]] – TA LuxR + DNA – ''Vibrio alginolyticus''<br />
**[[2dtz]], [[2hq5]] – SaTA QacR (mutant)<br />
**[[2dtz]], [[2hq5]] – SaTA QacR (mutant)<br />
**[[3bqz]], [[3br0]], [[3btc]], [[3btl]] – SaTA QacR (mutant) + malachite green<br />
**[[3bqz]], [[3br0]], [[3btc]], [[3btl]] – SaTA QacR (mutant) + malachite green<br />
Line 520: Line 541:
**[[4mgr]], [[4nob]], [[4tv7]] – BsTA GabR <br />
**[[4mgr]], [[4nob]], [[4tv7]] – BsTA GabR <br />
**[[6uxz]] – BsTA GabR + agonist<br />
**[[6uxz]] – BsTA GabR + agonist<br />
-
**[[5u9e]], [[5u93]] – TA RhaR regulatory domain – Bacteria latreille<br />
+
**[[5u9e]], [[5u93]] – TA RhaR regulatory domain – ''Bacteria latreille''<br />
-
**[[5z49]] – TA CmpR effector-binding domain + ribulose bisphosphate – Synechococcus elongatus<br />
+
**[[5z49]] – TA CmpR effector-binding domain + ribulose bisphosphate – ''Synechococcus elongatus''<br />
-
**[[3kos]] – CfTA AmpR effector binding domain – Citrobacter freundii<br />
+
**[[3kos]] – CfTA AmpR effector binding domain – ''Citrobacter freundii''<br />
**[[3kot]] – CfTA AmpR effector binding domain (mutant)<br />
**[[3kot]] – CfTA AmpR effector binding domain (mutant)<br />
**[[4wkm]] – CfTA AmpR effector binding domain + peptide<br />
**[[4wkm]] – CfTA AmpR effector binding domain + peptide<br />
**[[5mmh]] – PaTA AmpR effector binding domain <br />
**[[5mmh]] – PaTA AmpR effector binding domain <br />
- 
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

3D Structures of transcriptional activator

Updated on 01-January-2024 - For a general description of the protein see Transcriptional activator

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Transcriptional_activator_3D_structures"
Personal tools