7ut3
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 7ut3 is ON HOLD Authors: Li, M., Wlodawer, A. Description: Crystal structure of complex of Fab, G10C with GalNAc-pNP [[Category: Unreleased Structu...) |
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of complex of Fab, G10C with GalNAc-pNP== | |
+ | <StructureSection load='7ut3' size='340' side='right'caption='[[7ut3]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[7ut3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UT3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UT3 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TI0:4-nitrophenyl+2-acetamido-2-deoxy-alpha-D-galactopyranoside'>TI0</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ut3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ut3 OCA], [https://pdbe.org/7ut3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ut3 RCSB], [https://www.ebi.ac.uk/pdbsum/7ut3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ut3 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Glycosylation is a vital post-translational modification involved in a range of biological processes including protein folding, signaling, and cell-cell interactions. In 2011, a new type of O-linked glycosylation was discovered, wherein the side-chain oxygen of tyrosine is modified with a GalNAc residue (GalNAc-Tyr). At present, very little is known about GalNAc-Tyr prevalence, function, or biosynthesis. Herein, we describe the design and synthesis of a GalNAc-Tyr-derived hapten and its use in generating a GalNAc-Tyr selective monoclonal antibody. The antibody, G10C, has an unusually high affinity (app K(D) = 100 pM) and excellent selectivity for GalNAc-Tyr. We also obtained a crystal structure of the G10C Fab region in complex with 4-nitrophenyl-N-acetyl-alpha-d-galactosaminide (a small molecule mimic of GalNAc-Tyr) providing insights into the structural basis for high affinity and selectivity. Using this antibody, we discovered that GalNAc-Tyr is widely expressed in most human tissues, indicating that it is a ubiquitous and underappreciated post-translational modification. Localization to specific cell types and organ substructures within those tissues indicates that GalNAc-Tyr is likely regulated in a cell-specific manner. GalNAc-Tyr was also observed in a variety of cell lines and primary cells but was only present on the external cell surface in certain cancer cell lines, suggesting that GalNAc-Tyr localization may be altered in cancer cells. Collectively, the results shed new light on this under-studied form of glycosylation and provide access to new tools that will enable expanded biochemical and clinical investigations. | ||
- | + | Development of a GalNAc-Tyrosine-Specific Monoclonal Antibody and Detection of Tyrosine O-GalNAcylation in Numerous Human Tissues and Cell Lines.,Xia L, Bellomo TR, Gibadullin R, Congdon MD, Edmondson EF, Li M, Wlodawer A, Li C, Temme JS, Patel P, Butcher D, Gildersleeve JC J Am Chem Soc. 2022 Sep 14;144(36):16410-16422. doi: 10.1021/jacs.2c04477. Epub , 2022 Sep 2. PMID:36054098<ref>PMID:36054098</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 7ut3" style="background-color:#fffaf0;"></div> |
- | [[Category: Li | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Mus musculus]] | ||
+ | [[Category: Li M]] | ||
+ | [[Category: Wlodawer A]] |
Current revision
Crystal structure of complex of Fab, G10C with GalNAc-pNP
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