6ye4

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Current revision (08:53, 14 July 2024) (edit) (undo)
 
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<StructureSection load='6ye4' size='340' side='right'caption='[[6ye4]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
<StructureSection load='6ye4' size='340' side='right'caption='[[6ye4]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ye4]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_marcescens"_(bizio_1823)_trevisan_in_de_toni_and_trevisan_1889 "bacillus marcescens" (bizio 1823) trevisan in de toni and trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YE4 FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YE4 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGT:(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL+STEARATE'>PGT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">exbB, FG174_21755, PWN146_03792 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=615 "Bacillus marcescens" (Bizio 1823) Trevisan in de Toni and Trevisan 1889])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGT:(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL+STEARATE'>PGT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ye4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ye4 OCA], [https://pdbe.org/6ye4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ye4 RCSB], [https://www.ebi.ac.uk/pdbsum/6ye4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ye4 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ye4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ye4 OCA], [https://pdbe.org/6ye4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ye4 RCSB], [https://www.ebi.ac.uk/pdbsum/6ye4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ye4 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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ExbB and ExbD are cytoplasmic membrane proteins that associate with TonB to convey the energy of the proton-motive force to outer membrane receptors in Gram-negative bacteria for iron uptake. The opportunistic pathogen Serratia marcescens (Sm) possesses both TonB and a heme-specific TonB paralog, HasB. ExbBSm has a long periplasmic extension absent in other bacteria such as E. coli (Ec). Long ExbB's are found in several genera of Alphaproteobacteria, most often in correlation with a hasB gene. We investigated specificity determinants of ExbBSm and HasB. We determined the cryo-EM structures of ExbBSm and of the ExbB-ExbDSm complex from S. marcescens. ExbBSm alone is a stable pentamer, and its complex includes two ExbD monomers. We showed that ExbBSm extension interacts with HasB and is involved in heme acquisition and we identified key residues in the membrane domain of ExbBSm and ExbBEc, essential for function and likely involved in the interaction with TonB/HasB. Our results shed light on the class of inner membrane energy machinery formed by ExbB, ExbD and HasB.
 
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Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog.,Biou V, Adaixo RJD, Chami M, Coureux PD, Laurent B, Enguene VYN, de Amorim GC, Izadi-Pruneyre N, Malosse C, Chamot-Rooke J, Stahlberg H, Delepelaire P Commun Biol. 2022 Apr 13;5(1):355. doi: 10.1038/s42003-022-03306-y. PMID:35418619<ref>PMID:35418619</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 6ye4" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[ExbB|ExbB]]
*[[ExbB|ExbB]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Biou, V]]
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[[Category: Biou V]]
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[[Category: Chami, M]]
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[[Category: Chami M]]
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[[Category: Coureux, P D]]
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[[Category: Coureux PD]]
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[[Category: Delepelaire, P]]
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[[Category: Delepelaire P]]
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[[Category: Iron uptake]]
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[[Category: Membrane protein]]
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[[Category: Metal transport]]
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[[Category: Proton transfer]]
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[[Category: Tonb complex]]
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Current revision

Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy

PDB ID 6ye4

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