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3m8z

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Current revision (08:49, 6 September 2023) (edit) (undo)
 
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<StructureSection load='3m8z' size='340' side='right'caption='[[3m8z]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='3m8z' size='340' side='right'caption='[[3m8z]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3m8z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Baccr Baccr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M8Z FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3m8z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_14579 Bacillus cereus ATCC 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M8Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M8Z FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HSX:5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE'>HSX</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HSX:5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE'>HSX</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3m8w|3m8w]], [[3m8y|3m8y]], [[3m90|3m90]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">deoB, BC_4087 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226900 BACCR])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphopentomutase Phosphopentomutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.7 5.4.2.7] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m8z OCA], [https://pdbe.org/3m8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m8z RCSB], [https://www.ebi.ac.uk/pdbsum/3m8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m8z ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m8z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m8z OCA], [https://pdbe.org/3m8z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m8z RCSB], [https://www.ebi.ac.uk/pdbsum/3m8z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m8z ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/DEOB_BACCR DEOB_BACCR]] Phosphotransfer between the C1 and C5 carbon atoms of pentose (By similarity).
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[https://www.uniprot.org/uniprot/DEOB_BACCR DEOB_BACCR] Phosphotransfer between the C1 and C5 carbon atoms of pentose (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Baccr]]
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[[Category: Bacillus cereus ATCC 14579]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Phosphopentomutase]]
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[[Category: Bachmann BO]]
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[[Category: Bachmann, B O]]
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[[Category: Iverson TM]]
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[[Category: Iverson, T M]]
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[[Category: Nannemann DP]]
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[[Category: Nannemann, D P]]
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[[Category: Panosian TD]]
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[[Category: Panosian, T D]]
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[[Category: Wadzinski B]]
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[[Category: Wadzinski, B]]
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[[Category: Watkins G]]
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[[Category: Watkins, G]]
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[[Category: Alkaline phosphatase like core domain]]
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[[Category: Di-metallo catalytic center]]
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[[Category: Isomerase]]
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[[Category: Manganese]]
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[[Category: Manganese binding]]
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[[Category: Metal-binding]]
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Current revision

Phosphopentomutase from Bacillus cereus bound with ribose-5-phosphate

PDB ID 3m8z

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