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3qse

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Current revision (11:56, 14 March 2024) (edit) (undo)
 
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<StructureSection load='3qse' size='340' side='right'caption='[[3qse]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='3qse' size='340' side='right'caption='[[3qse]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3qse]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacb0 Bacb0]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QSE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QSE FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3qse]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._B-0618 Bacillus sp. B-0618]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QSE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QSE FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1l9f|1l9f]], [[3qsm|3qsm]], [[3qss|3qss]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SAR:SARCOSINE'>SAR</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">soxA, sox ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69000 BACB0])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sarcosine_oxidase Sarcosine oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.5.3.1 1.5.3.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qse FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qse OCA], [https://pdbe.org/3qse PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qse RCSB], [https://www.ebi.ac.uk/pdbsum/3qse PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qse ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qse FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qse OCA], [https://pdbe.org/3qse PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qse RCSB], [https://www.ebi.ac.uk/pdbsum/3qse PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qse ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/MSOX_BACB0 MSOX_BACB0]] Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.[HAMAP-Rule:MF_00516]
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[https://www.uniprot.org/uniprot/MSOX_BACB0 MSOX_BACB0] Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.[HAMAP-Rule:MF_00516]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A single basic residue above the si-face of the flavin ring is the site of oxygen activation in glucose oxidase (GOX) (His516) and monomeric sarcosine oxidase (MSOX) (Lys265). Crystal structures of both flavoenzymes exhibit a small pocket at the oxygen activation site that might provide a preorganized binding site for superoxide anion, an obligatory intermediate in the two-electron reduction of oxygen. Chloride binds at these polar oxygen activation sites, as judged by solution and structural studies. First, chloride forms spectrally detectable complexes with GOX and MSOX. The protonated form of His516 is required for tight binding of chloride to oxidized GOX and for rapid reaction of reduced GOX with oxygen. Formation of a binary MSOX.chloride complex requires Lys265 and is not observed with Lys265Met. Binding of chloride to MSOX does not affect the binding of a sarcosine analogue (MTA, methylthioactetate) above the re-face of the flavin ring. Definitive evidence is provided by crystal structures determined for a binary MSOX.chloride complex and a ternary MSOX.chloride.MTA complex. Chloride binds in the small pocket at a position otherwise occupied by a water molecule and forms hydrogen bonds to four ligands that are arranged in approximate tetrahedral geometry: Lys265:NZ, Arg49:NH1, and two water molecules, one of which is hydrogen bonded to FAD:N5. The results show that chloride (i) acts as an oxygen surrogate, (ii) is an effective probe of polar oxygen activation sites, and (iii) provides a valuable complementary tool to the xenon gas method that is used to map nonpolar oxygen-binding cavities.
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Probing Oxygen Activation Sites in Two Flavoprotein Oxidases Using Chloride as an Oxygen Surrogate.,Kommoju PR, Chen ZW, Bruckner RC, Mathews FS, Jorns MS Biochemistry. 2011 May 26. PMID:21568312<ref>PMID:21568312</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3qse" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
*[[Sarcosine oxidase|Sarcosine oxidase]]
*[[Sarcosine oxidase|Sarcosine oxidase]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacb0]]
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[[Category: Bacillus sp. B-0618]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Sarcosine oxidase]]
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[[Category: Bruckner RC]]
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[[Category: Bruckner, R C]]
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[[Category: Chen Z]]
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[[Category: Chen, Z]]
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[[Category: Jorns MS]]
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[[Category: Jorns, M S]]
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[[Category: Kommoju P]]
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[[Category: Kommoju, P]]
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[[Category: Mathews FS]]
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[[Category: Mathews, F S]]
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[[Category: Flavoprotein]]
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[[Category: Oxidase]]
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[[Category: Oxidoreductase]]
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Current revision

Crystal structure for the complex of substrate-reduced msox with sarcosine

PDB ID 3qse

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