3r5f

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Current revision (17:15, 1 November 2023) (edit) (undo)
 
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<StructureSection load='3r5f' size='340' side='right'caption='[[3r5f]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
<StructureSection load='3r5f' size='340' side='right'caption='[[3r5f]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3r5f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanor Xanor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5F FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3r5f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_KACC_10331 Xanthomonas oryzae pv. oryzae KACC 10331]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R5F FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/D-alanine--D-alanine_ligase D-alanine--D-alanine ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.4 6.3.2.4] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5f OCA], [https://pdbe.org/3r5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5f RCSB], [https://www.ebi.ac.uk/pdbsum/3r5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5f ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r5f OCA], [https://pdbe.org/3r5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r5f RCSB], [https://www.ebi.ac.uk/pdbsum/3r5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r5f ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/Q2P8P8_XANOM Q2P8P8_XANOM]] Cell wall formation (By similarity).[SAAS:SAAS005905_004_000867][HAMAP-Rule:MF_00047]
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[https://www.uniprot.org/uniprot/Q5H614_XANOR Q5H614_XANOR] Cell wall formation (By similarity).[SAAS:SAAS005905_004_000867][HAMAP-Rule:MF_00047]
==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: D-alanine--D-alanine ligase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Xanor]]
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[[Category: Xanthomonas oryzae pv. oryzae KACC 10331]]
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[[Category: Doan, T T.N]]
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[[Category: Doan TTN]]
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[[Category: Kang, L W]]
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[[Category: Kang LW]]
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[[Category: Kim, J K]]
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[[Category: Kim JK]]
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[[Category: Atp-grasp domain]]
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[[Category: Ligase]]
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[[Category: Xoddl-atp complex]]
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Current revision

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

PDB ID 3r5f

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