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| | <StructureSection load='3s8m' size='340' side='right'caption='[[3s8m]], [[Resolution|resolution]] 1.60Å' scene=''> | | <StructureSection load='3s8m' size='340' side='right'caption='[[3s8m]], [[Resolution|resolution]] 1.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3s8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanom Xanom]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S8M FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3s8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_oryzae_pv._oryzae_MAFF_311018 Xanthomonas oryzae pv. oryzae MAFF 311018]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S8M FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Xanthomonas oryzae, XOO0026 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=342109 XANOM])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s8m OCA], [https://pdbe.org/3s8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s8m RCSB], [https://www.ebi.ac.uk/pdbsum/3s8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s8m ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s8m OCA], [https://pdbe.org/3s8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s8m RCSB], [https://www.ebi.ac.uk/pdbsum/3s8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s8m ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[https://www.uniprot.org/uniprot/Y026_XANOM Y026_XANOM]] Probable reductase (By similarity).
| + | [https://www.uniprot.org/uniprot/FABV_XANOM FABV_XANOM] Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). It can also use crotonyl-CoA.<ref>PMID:22039545</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Xanom]] | + | [[Category: Xanthomonas oryzae pv. oryzae MAFF 311018]] |
| - | [[Category: Bi, L J]] | + | [[Category: Bi LJ]] |
| - | [[Category: He, J]] | + | [[Category: He J]] |
| - | [[Category: Jiang, T]] | + | [[Category: Jiang T]] |
| - | [[Category: Li, H]] | + | [[Category: Li H]] |
| - | [[Category: Zhang, X L]] | + | [[Category: Zhang XL]] |
| - | [[Category: Enoyl-acp]]
| + | |
| - | [[Category: Fatty acid synthesis]]
| + | |
| - | [[Category: Nadh binding]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Rossmann fold]]
| + | |
| Structural highlights
Function
FABV_XANOM Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon-carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP). It can also use crotonyl-CoA.[1]
Publication Abstract from PubMed
BACKGROUND: Enoyl-ACP reductase (ENR) catalyses the last reduction reaction in the fatty acid elongation cycle in bacteria and is a good antimicrobial target candidate. FabV is the most recently discovered class of ENR, but we lack information about the atomic structure and the key residues involved in reductase activity except for the known conserved tyrosine and lysine residues in the Y-X(8)-K active site motif. METHODOLOGY/PRINCIPAL FINDINGS: Here we report the crystal structure of FabV from Xanthomonas oryzae (xoFabV). The crystal structure of this enzyme has been solved to 1.6 A resolution in space group P2(1)2(1)2(1). The model of xoFabV consists of one monomer in the asymmetric unit which is composed of 13 alpha-helices and 11 beta-strands, representing a canonical Rossmann fold architecture. Structural comparison presents that the locations of the conserved tyrosine (Y236) and lysine (K245) residues in the Y-X(8)-K active site motif of xoFabV and the Y-X(6)-K motif of ecFabI are notably similar. However, the conformations of Y236 in xoFabV and Y156 in ecFabI are distinct. Structure-based site-directed mutagenesis and enzymatic activity assays reveal that in addition to the conserved Y236 and K245 in the Y-X(8)-K motif, Y53, D111 and Y226 are key residues implicated in the reductase activity, and F113 and T276 are also important for enzyme function. Moreover, a proposed active lysine located immediately after the Y-X(8)-K motif in FabV from Burkholderia mallei (bmFabV) is altered to an inactive V246 in xoFabV. CONCLUSIONS/SIGNIFICANCE: We determine the first crystal structure of the FabV enzyme and identify several residues important for its enzymatic activity. These findings lay a solid foundation for the development of specific antibacterial inhibitors of the pathogenic bacteria, such as Vibrio cholerae, Burkholderia species and Xanthomonas species.
Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae.,Li H, Zhang X, Bi L, He J, Jiang T PLoS One. 2011;6(10):e26743. Epub 2011 Oct 21. PMID:22039545[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Li H, Zhang X, Bi L, He J, Jiang T. Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae. PLoS One. 2011;6(10):e26743. Epub 2011 Oct 21. PMID:22039545 doi:10.1371/journal.pone.0026743
- ↑ Li H, Zhang X, Bi L, He J, Jiang T. Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae. PLoS One. 2011;6(10):e26743. Epub 2011 Oct 21. PMID:22039545 doi:10.1371/journal.pone.0026743
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