This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 1hjm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1hjm (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= |ACTIVITY= |GENE= |DOMAIN=<span class='plainlin...)
Current revision (12:16, 24 March 2013) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1hjm (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1hjm]], [[NMR_Ensembles_of_Models | 1 NMR models]] (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
|RELATEDENTRY=[[1e1g|1e1g]], [[1e1j|1e1j]], [[1e1p|1e1p]], [[1e1s|1e1s]], [[1e1u|1e1u]], [[1e1w|1e1w]], [[1hjn|1hjn]]
-
|LIGAND=
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hjm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hjm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hjm RCSB], [http://www.ebi.ac.uk/pdbsum/1hjm PDBsum]</span>
-
|ACTIVITY=
+
|FUNCTION={{GO|id=GO:0005507 | text = copper ion binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0048503 | text = GPI anchor binding}}{{GO|id=GO:0015631 | text = tubulin binding}}{{GO|id=GO:0008017 | text = microtubule binding}}
-
|GENE=
+
|PROCESS={{GO|id=GO:0051260 | text = protein homooligomerization}}{{GO|id=GO:0006878 | text = cellular copper ion homeostasis}}{{GO|id=GO:0008152 | text = metabolic process}}{{GO|id=GO:0006979 | text = response to oxidative stress}}
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00157 PRP]</span>
+
|COMPONENT={{GO|id=GO:0019898 | text = extrinsic to membrane}}{{GO|id=GO:0005886 | text = plasma membrane}}{{GO|id=GO:0005794 | text = Golgi apparatus}}{{GO|id=GO:0045121 | text = membrane raft}}{{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0016020 | text = membrane}}{{GO|id=GO:0005783 | text = endoplasmic reticulum}}
-
|RELATEDENTRY=
+
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1hjmA00 1Hjma00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000817 Ipr000817]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00377 PF00377]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=83489 d1hjma_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P04156 P04156]</span>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hjm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hjm OCA], [http://www.ebi.ac.uk/pdbsum/1hjm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1hjm RCSB]</span>
+
|uPDB=1HJM|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1hjm_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1hjm, 1 NMR models ()
Related: 1e1g, 1e1j, 1e1p, 1e1s, 1e1u, 1e1w, 1hjn
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools