7xgj
From Proteopedia
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<StructureSection load='7xgj' size='340' side='right'caption='[[7xgj]], [[Resolution|resolution]] 2.80Å' scene=''> | <StructureSection load='7xgj' size='340' side='right'caption='[[7xgj]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[7xgj]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XGJ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7xgj]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Iris_severe_mosaic_virus Iris severe mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7XGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7XGJ FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GZS:4-[(4-phenoxyphenyl)sulfonylamino]butanoic+acid'>GZS</scene>, <scene name='pdbligand=H0F:2-[(2~{S})-1-[(2~{S},3~{S})-3-methyl-2-(methylamino)pentanoyl]pyrrolidin-2-yl]ethanamide'>H0F</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xgj OCA], [https://pdbe.org/7xgj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xgj RCSB], [https://www.ebi.ac.uk/pdbsum/7xgj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xgj ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7xgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7xgj OCA], [https://pdbe.org/7xgj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7xgj RCSB], [https://www.ebi.ac.uk/pdbsum/7xgj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7xgj ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Matrix metalloproteinase-2 (MMP2) is a zinc-dependent endopeptidase that plays important roles in the degradation of extracellular matrix proteins. MMP2 is considered to be an attractive target for the treatment of various diseases such as cancer, arthritis, and fibrosis. In this study, we have developed a novel class of MMP2-selective inhibitors by hybridizing the peptide that binds to a zinc ion and S2-S5 pockets with small molecules that bind to the S1' pocket. Structural modifications based on X-ray crystallography revealed that the introduction of 2,4-diaminobutanoic acid (Dab) at position 4 dramatically enhanced MMP2 selectivity by forming an electrostatic interaction with Glu130. After improving the metabolic and chemical stability, TP0556351 (9) was identified. It exhibited potent MMP2 inhibitory activity (IC50 = 0.20 nM) and extremely high selectivity. It suppressed the accumulation of collagen in a bleomycin-induced idiopathic pulmonary fibrosis model in mice, demonstrating the efficacy of MMP2-selective inhibitors for fibrosis. | ||
| - | + | ==See Also== | |
| - | + | *[[Matrix metalloproteinase 3D structures|Matrix metalloproteinase 3D structures]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| + | [[Category: Iris severe mosaic virus]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Kamitani | + | [[Category: Kamitani M]] |
| - | [[Category: Mima | + | [[Category: Mima M]] |
| - | [[Category: Takeuchi | + | [[Category: Takeuchi T]] |
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Current revision
Crystal structure of human MMP-2 catalytic domain in complex with inhibitor
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