7qvb

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<StructureSection load='7qvb' size='340' side='right'caption='[[7qvb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='7qvb' size='340' side='right'caption='[[7qvb]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7qvb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QVB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7qvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QVB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qvb OCA], [https://pdbe.org/7qvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qvb RCSB], [https://www.ebi.ac.uk/pdbsum/7qvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qvb ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qvb OCA], [https://pdbe.org/7qvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qvb RCSB], [https://www.ebi.ac.uk/pdbsum/7qvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qvb ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Deinococcus radiodurans is a spherical bacterium well-known for its outstanding resistance to DNA-damaging agents. Exposure to such agents leads to drastic changes in the transcriptome of D. radiodurans. In particular, four Deinococcus-specific genes, known as DNA Damage Response genes, are strongly up-regulated and have been shown to contribute to the resistance phenotype of D. radiodurans. One of these, DdrC, is expressed shortly after exposure to gamma-radiation and is rapidly recruited to the nucleoid. In vitro, DdrC has been shown to compact circular DNA, circularize linear DNA, anneal complementary DNA strands and protect DNA from nucleases. To shed light on the possible functions of DdrC in D. radiodurans, we determined the crystal structure of the domain-swapped DdrC dimer at a resolution of 2.5 A and further characterized its DNA binding and compaction properties. Notably, we show that DdrC bears two asymmetric DNA binding sites located on either side of the dimer and can modulate the topology and level of compaction of circular DNA. These findings suggest that DdrC may be a DNA damage-induced nucleoid-associated protein that enhances nucleoid compaction to limit the dispersion of the fragmented genome and facilitate DNA repair after exposure to severe DNA damaging conditions.
 
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Structural and functional characterization of DdrC, a novel DNA damage-induced nucleoid associated protein involved in DNA compaction.,Banneville AS, Bouthier de la Tour C, De Bonis S, Hognon C, Colletier JP, Teulon JM, Le Roy A, Pellequer JL, Monari A, Dehez F, Confalonieri F, Servant P, Timmins J Nucleic Acids Res. 2022 Jul 8. pii: 6633903. doi: 10.1093/nar/gkac563. PMID:35801857<ref>PMID:35801857</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 7qvb" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Deinococcus radiodurans R1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Banneville, A S]]
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[[Category: Banneville AS]]
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[[Category: Colletier, J P]]
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[[Category: Colletier JP]]
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[[Category: Timmins, J]]
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[[Category: Timmins J]]
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[[Category: D. radioduran]]
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[[Category: Ddrc]]
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[[Category: Dimer]]
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[[Category: Dna binding protein]]
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[[Category: Dna-binding protein]]
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[[Category: Domain-swapping]]
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[[Category: Nucleoid-associated protein]]
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[[Category: Radiation resistance]]
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Current revision

Crystal structure of the DNA-binding protein DdrC from Deinococcus radiodurans

PDB ID 7qvb

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