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User:Karsten Theis/Sandbox 4
From Proteopedia
< User:Karsten Theis(Difference between revisions)
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| - | <StructureSection size='350' side='right' scene=''> | + | <StructureSection load='' size='350' frame='true' height='500' side='right' caption='' scene='91/919062/Blue_adamantane/1'> |
| + | ==Receptor ligand interaction== | ||
| - | + | <scene name='88/886517/Overall/3'>First scene</scene> | |
| - | + | ||
| - | + | <scene name='88/886517/Pocket/1'>Second scene | |
| + | </scene> | ||
| - | < | + | ==Adamantane== |
| - | <jmolLink> | + | |
| + | <scene name='91/919062/Blue_adamantane_2/1'>not working | ||
| + | </scene>91/919062/Blue_adamantane_2/1 atoms are loaded, not displayed | ||
| + | |||
| + | <scene name='88/886517/Blue_adamantane_2/1'>working</scene>: 88/886517/Blue_adamantane_2/1 | ||
| + | |||
| + | <scene name='91/919062/Blue_adamantane/1'>does not load atoms, but displays them</scene>: 91/919062/Blue_adamantane/1 | ||
| + | |||
| + | |||
| + | |||
| + | </StructureSection> | ||
| + | |||
| + | ==all about adamantane== | ||
| + | testing here | ||
| + | |||
| + | <StructureSection load='' size='350' side='right' caption='Insert caption here' scene='91/919062/Blue_adamantane/1'> | ||
| + | |||
| + | this is a test | ||
| + | |||
| + | |||
| + | An example of using unaltered PNGJ files, <jmol><jmolLink> | ||
<script> | <script> | ||
| - | load wiki/images/ | + | load /wiki/images/a/a0/Histamine_-_Copy.png |
</script> | </script> | ||
| - | + | <text>click here to see</text> | |
| - | + | </jmolLink></jmol> how it looks. | |
| - | </jmol> | + | |
| - | The load command in the script loads a "frozen" uploaded PDB file [[Image:1sva-revdat2009.pdb.gz]]. | ||
| - | When that command is run in the Proteopedia JSmol console, the virus capsid loads correctly. | ||
| - | Here is an extremely simplified script: | ||
| - | <small><pre> | ||
| - | set autobond false; | ||
| - | load "https://proteopedia.org/wiki/images/2/29/1sva-revdat2009.pdb.gz" FILTER "*.CA;biomolecule 1;bmchains;/=5"; | ||
| - | spacefill 4.0; | ||
| - | color chain; | ||
| - | </pre></small> | ||
| - | When the above 4 commands are copied and pasted into the JSmol console and run, they work. | ||
| - | + | </StructureSection> | |
| - | <!-- | ||
| - | OBSOLETE - FAILS TO LOAD: <scene name='85/859610/Half_capsid_spt_minus_props/1'>Half Capsid by Script</scene>: Scene created by dropping half-capsid-nodata.spt into JSmol after first loading 1sva. State script load command modified to | ||
| - | load "" FILTER "*.CA;biomolecule 1;bmchains;/=5"; and function _setDataState() made an empty function {} (previously it assigned distances from center to each of ~25,000 alpha carbons). | ||
| - | --> | ||
| - | </ | + | |
| + | == References == | ||
| + | <references/> | ||
Current revision
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all about adamantane
testing here
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