3vvu

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Current revision (08:42, 20 March 2024) (edit) (undo)
 
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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3vvu]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VVU FirstGlance]. <br>
<table><tr><td colspan='2'>[[3vvu]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VVU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VVU FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3vvt|3vvt]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vvu OCA], [https://pdbe.org/3vvu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vvu RCSB], [https://www.ebi.ac.uk/pdbsum/3vvu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vvu ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vvu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vvu OCA], [https://pdbe.org/3vvu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vvu RCSB], [https://www.ebi.ac.uk/pdbsum/3vvu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vvu ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Theoretical studies have focused on the environmental temperature of the universal common ancestor of life with conflicting conclusions. Here we provide experimental support for the existence of a thermophilic universal common ancestor. We present the thermal stabilities and catalytic efficiencies of nucleoside diphosphate kinases (NDK), designed using the information contained in predictive phylogenetic trees, that seem to represent the last common ancestors of Archaea and of Bacteria. These enzymes display extreme thermal stabilities, suggesting thermophilic ancestries for Archaea and Bacteria. The results are robust to the uncertainties associated with the sequence predictions and to the tree topologies used to infer the ancestral sequences. Moreover, mutagenesis experiments suggest that the universal ancestor also possessed a very thermostable NDK. Because, as we show, the stability of an NDK is directly related to the environmental temperature of its host organism, our results indicate that the last common ancestor of extant life was a thermophile that flourished at a very high temperature.
 
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Experimental evidence for the thermophilicity of ancestral life.,Akanuma S, Nakajima Y, Yokobori S, Kimura M, Nemoto N, Mase T, Miyazono K, Tanokura M, Yamagishi A Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11067-72. doi:, 10.1073/pnas.1308215110. Epub 2013 Jun 17. PMID:23776221<ref>PMID:23776221</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 3vvu" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Akanuma S]]
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[[Category: Akanuma, S]]
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[[Category: Kimura M]]
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[[Category: Kimura, M]]
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[[Category: Miyazono K]]
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[[Category: Miyazono, K]]
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[[Category: Nemoto N]]
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[[Category: Nemoto, N]]
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[[Category: Tanokura M]]
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[[Category: Tanokura, M]]
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[[Category: Yamagishi A]]
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[[Category: Yamagishi, A]]
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[[Category: Yokobori S]]
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[[Category: Yokobori, S]]
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[[Category: Ancestor]]
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[[Category: Bacteria]]
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[[Category: Ndk]]
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[[Category: Transferase]]
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Current revision

Crystal structure of reconstructed bacterial ancestral NDK, Bac1

PDB ID 3vvu

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