7ud5

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'''Unreleased structure'''
 
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The entry 7ud5 is ON HOLD
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==Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome==
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<StructureSection load='7ud5' size='340' side='right'caption='[[7ud5]], [[Resolution|resolution]] 4.25&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7ud5]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UD5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.25&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ud5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ud5 OCA], [https://pdbe.org/7ud5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ud5 RCSB], [https://www.ebi.ac.uk/pdbsum/7ud5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ud5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/H32_XENLA H32_XENLA] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The human Mixed Lineage Leukemia-1 (MLL1) complex methylates histone H3K4 to promote transcription and is stimulated by monoubiquitination of histone H2B. Recent structures of the MLL1-WRAD core complex, which comprises the MLL1 methyltransferase, WDR5, RbBp5, Ash2L, and DPY-30, have revealed variability in the docking of MLL1-WRAD on nucleosomes. In addition, portions of the Ash2L structure and the position of DPY30 remain ambiguous. We used an integrated approach combining cryoelectron microscopy (cryo-EM) and mass spectrometry cross-linking to determine a structure of the MLL1-WRAD complex bound to ubiquitinated nucleosomes. The resulting model contains the Ash2L intrinsically disordered region (IDR), SPRY insertion region, Sdc1-DPY30 interacting region (SDI-motif), and the DPY30 dimer. We also resolved three additional states of MLL1-WRAD lacking one or more subunits, which may reflect different steps in the assembly of MLL1-WRAD. The docking of subunits in all four states differs from structures of MLL1-WRAD bound to unmodified nucleosomes, suggesting that H2B-ubiquitin favors assembly of the active complex. Our results provide a more complete picture of MLL1-WRAD and the role of ubiquitin in promoting formation of the active methyltransferase complex.
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Authors: Niklas, H.A., Rahman, S., Worden, E.J., Wolberger, C.
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Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.,Rahman S, Hoffmann NA, Worden EJ, Smith ML, Namitz KEW, Knutson BA, Cosgrove MS, Wolberger C Proc Natl Acad Sci U S A. 2022 Sep 20;119(38):e2205691119. doi: , 10.1073/pnas.2205691119. Epub 2022 Sep 12. PMID:36095189<ref>PMID:36095189</ref>
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Description: Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Niklas, H.A]]
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<div class="pdbe-citations 7ud5" style="background-color:#fffaf0;"></div>
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[[Category: Worden, E.J]]
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[[Category: Wolberger, C]]
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==See Also==
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[[Category: Rahman, S]]
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*[[Histone 3D structures|Histone 3D structures]]
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*[[Histone methyltransferase 3D structures|Histone methyltransferase 3D structures]]
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*[[Retinoblastoma-binding protein 3D structures|Retinoblastoma-binding protein 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Synthetic construct]]
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[[Category: Xenopus laevis]]
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[[Category: Niklas HA]]
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[[Category: Rahman S]]
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[[Category: Wolberger C]]
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[[Category: Worden EJ]]

Current revision

Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome

PDB ID 7ud5

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