8djh

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'''Unreleased structure'''
 
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The entry 8djh is ON HOLD until Paper Publication
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==Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc==
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<StructureSection load='8djh' size='340' side='right'caption='[[8djh]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[8djh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DJH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DJH FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8djh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8djh OCA], [https://pdbe.org/8djh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8djh RCSB], [https://www.ebi.ac.uk/pdbsum/8djh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8djh ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/SUMO1_HUMAN SUMO1_HUMAN] Defects in SUMO1 are the cause of non-syndromic orofacial cleft type 10 (OFC10) [MIM:[https://omim.org/entry/613705 613705]; also called non-syndromic cleft lip with or without cleft palate 10. OFC10 is a birth defect consisting of cleft lips with or without cleft palate. Cleft lips are associated with cleft palate in two-third of cases. A cleft lip can occur on one or both sides and range in severity from a simple notch in the upper lip to a complete opening in the lip extending into the floor of the nostril and involving the upper gum. Note=A chromosomal aberation involving SUMO1 is the cause of OFC10. Translocation t(2;8)(q33.1;q24.3). The breakpoint occurred in the SUMO1 gene and resulted in haploinsufficiency confirmed by protein assays.<ref>PMID:16990542</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/SUMO1_HUMAN SUMO1_HUMAN] Ubiquitin-like protein that can be covalently attached to proteins as a monomer or a lysine-linked polymer. Covalent attachment via an isopeptide bond to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by E3 ligases such as PIAS1-4, RANBP2 or CBX4. This post-translational modification on lysine residues of proteins plays a crucial role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Involved for instance in targeting RANGAP1 to the nuclear pore complex protein RANBP2. Polymeric SUMO1 chains are also susceptible to polyubiquitination which functions as a signal for proteasomal degradation of modified proteins. May also regulate a network of genes involved in palate development.<ref>PMID:9019411</ref> <ref>PMID:9162015</ref> <ref>PMID:18538659</ref> <ref>PMID:18408734</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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SUMO proteins are important regulators of many key cellular functions in part through their ability to form interactions with other proteins containing SUMO interacting motifs (SIMs). One characteristic feature of all SUMO proteins is the presence of a highly divergent intrinsically disordered region at their N-terminus. In this study, we examine the role of this N-terminal region of SUMO proteins in SUMO-SIM interactions required for the formation of nuclear bodies by the promyelocytic leukemia (PML) protein (PML-NBs). We demonstrate that the N-terminal region of SUMO1 functions in a paralog specific manner as an auto-inhibition domain by blocking its binding to the phosphorylated SIMs of PML and Daxx. Interestingly, we find that this auto-inhibition in SUMO1 is relieved by zinc, and structurally show that zinc stabilizes the complex between SUMO1 and a phospho-mimetic form of the SIM of PML. In addition, we demonstrate that increasing cellular zinc levels enhances PML-NB formation in senescent cells. Taken together, these results provide important insights into a paralog specific function of SUMO1, and suggest that zinc levels could play a crucial role in regulating SUMO1-SIM interactions required for PML-NB formation and function.
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Authors: Lussier-Price, M., Wahba, H.M., Mascle, X.H., Cappadocia, L., Bourdeau, V., Gagnon, C., Igelmann, S., Sakaguchi, K., Ferbeyre, G., Omichinski, J.G.
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Zinc controls PML nuclear body formation through regulation of a paralog specific auto-inhibition in SUMO1.,Lussier-Price M, Wahba HM, Mascle XH, Cappadocia L, Bourdeau V, Gagnon C, Igelmann S, Sakaguchi K, Ferbeyre G, Omichinski JG Nucleic Acids Res. 2022 Aug 12;50(14):8331-8348. doi: 10.1093/nar/gkac620. PMID:35871297<ref>PMID:35871297</ref>
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Description: Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Bourdeau, V]]
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<div class="pdbe-citations 8djh" style="background-color:#fffaf0;"></div>
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[[Category: Cappadocia, L]]
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== References ==
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[[Category: Wahba, H.M]]
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<references/>
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[[Category: Omichinski, J.G]]
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__TOC__
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[[Category: Gagnon, C]]
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</StructureSection>
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[[Category: Igelmann, S]]
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[[Category: Homo sapiens]]
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[[Category: Ferbeyre, G]]
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[[Category: Large Structures]]
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[[Category: Mascle, X.H]]
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[[Category: Bourdeau V]]
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[[Category: Lussier-Price, M]]
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[[Category: Cappadocia L]]
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[[Category: Sakaguchi, K]]
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[[Category: Ferbeyre G]]
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[[Category: Gagnon C]]
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[[Category: Igelmann S]]
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[[Category: Lussier-Price M]]
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[[Category: Mascle XH]]
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[[Category: Omichinski JG]]
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[[Category: Sakaguchi K]]
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[[Category: Wahba HM]]

Current revision

Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc

PDB ID 8djh

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