7b9p

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<StructureSection load='7b9p' size='340' side='right'caption='[[7b9p]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
<StructureSection load='7b9p' size='340' side='right'caption='[[7b9p]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[7b9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7B9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7B9P FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7B9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7B9P FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.646&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTP:2-DEOXYADENOSINE+5-TRIPHOSPHATE'>DTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7b9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7b9p OCA], [https://pdbe.org/7b9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7b9p RCSB], [https://www.ebi.ac.uk/pdbsum/7b9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7b9p ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7b9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7b9p OCA], [https://pdbe.org/7b9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7b9p RCSB], [https://www.ebi.ac.uk/pdbsum/7b9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7b9p ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Ribonucleotide reductases (RNRs) catalyze the reduction of ribonucleotides to the corresponding deoxyribonucleotides. The catalytic activity of most RNRs depends on the formation of a dimer of the catalytic subunits. The active site is located at the interface, and part of the substrate binding site and regulatory mechanisms work across the subunit in the dimer. In this study, we describe and characterize a novel domain responsible for forming the catalytic dimer in several class II RNRs. The 3D structure of the class II RNR from Rhodobacter sphaeroides reveals a so far undescribed alpha-helical domain in the dimer interface, which is embracing the other subunit. Genetic removal of this HUG domain leads to a severe reduction of activity paired with reduced dimerization capability. In comparison with other described RNRs, the enzyme with this domain is less dependent on the presence of nucleotides to act as allosteric effectors in the formation of dimers. The HUG domain appears to serve as an interlock to keep the dimer intact and functional even at low enzyme and/or effector concentrations.
 
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HUG Domain Is Responsible for Active Dimer Stabilization in an NrdJd Ribonucleotide Reductase.,Fietze T, Wilk P, Kabinger F, Anoosheh S, Hofer A, Lundin D, Feiler CG, Weiss MS, Loderer C Biochemistry. 2022 Aug 2;61(15):1633-1641. doi: 10.1021/acs.biochem.2c00173. Epub, 2022 Jul 20. PMID:35856337<ref>PMID:35856337</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 7b9p" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ribonucleoside-diphosphate reductase]]
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[[Category: Feiler C]]
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[[Category: Feiler, C]]
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[[Category: Kabinger F]]
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[[Category: Kabinger, F]]
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[[Category: Loderer C]]
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[[Category: Loderer, C]]
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[[Category: Wilk P]]
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[[Category: Wilk, P]]
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[[Category: Allosteric effector]]
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[[Category: Oxidoreductase]]
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[[Category: Ribonucleotide reductase]]
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[[Category: Thiyl radical enzyme]]
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Current revision

Structure of Ribonucleotide reductase from Rhodobacter sphaeroides

PDB ID 7b9p

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