7y0g
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- | ==== | + | ==Crystal structure of anti-mPEG h15-2b Fab== |
- | <StructureSection load='7y0g' size='340' side='right'caption='[[7y0g]]' scene=''> | + | <StructureSection load='7y0g' size='340' side='right'caption='[[7y0g]], [[Resolution|resolution]] 2.08Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7y0g]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7Y0G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7Y0G FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7y0g OCA], [https://pdbe.org/7y0g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7y0g RCSB], [https://www.ebi.ac.uk/pdbsum/7y0g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7y0g ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=P15:2,5,8,11,14,17-HEXAOXANONADECAN-19-OL'>P15</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7y0g OCA], [https://pdbe.org/7y0g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7y0g RCSB], [https://www.ebi.ac.uk/pdbsum/7y0g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7y0g ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Covalent attachment of methoxy poly(ethylene) glycol (mPEG) to therapeutic molecules is widely employed to improve their systemic circulation time and therapeutic efficacy. mPEG, however, can induce anti-PEG antibodies that negatively impact drug therapeutic effects. However, the underlying mechanism for specific binding of antibodies to mPEG remains unclear. Here, we determined the first co-crystal structure of the humanized 15-2b anti-mPEG antibody in complex with mPEG, which possesses a deep pocket in the antigen-binding site to accommodate the mPEG polymer. Structural and mutational analyses revealed that mPEG binds to h15-2b via Van der Waals and hydrogen bond interactions, whereas the methoxy group of mPEG is stabilized in a hydrophobic environment between the V(H):V(L) interface. Replacement of the heavy chain hydrophobic V37 residue with a neutral polar serine or threonine residue offers additional hydrogen bond interactions with methoxyl and hydroxyl groups, resulting in cross-reactivity to mPEG and OH-PEG. Our findings provide insights into understanding mPEG-binding specificity and antigenicity of anti-mPEG antibodies. | ||
+ | |||
+ | Structural determination of an antibody that specifically recognizes polyethylene glycol with a terminal methoxy group.,Nguyen MT, Shih YC, Lin MH, Roffler SR, Hsiao CY, Cheng TL, Lin WW, Lin EC, Jong YJ, Chang CY, Su YC Commun Chem. 2022;5(1):88. doi: 10.1038/s42004-022-00709-0. Epub 2022 Aug 1. PMID:35936993<ref>PMID:35936993</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7y0g" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Antibody 3D structures|Antibody 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Chang CY]] |
+ | [[Category: Lin EC]] | ||
+ | [[Category: Nguyen TMT]] | ||
+ | [[Category: Su YC]] |
Current revision
Crystal structure of anti-mPEG h15-2b Fab
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Categories: Homo sapiens | Large Structures | Chang CY | Lin EC | Nguyen TMT | Su YC