This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7rcy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:28, 18 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7rcy' size='340' side='right'caption='[[7rcy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='7rcy' size='340' side='right'caption='[[7rcy]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7rcy]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RCY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7rcy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_R20291 Clostridioides difficile R20291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RCY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RB6:(2R)-2-[(1R)-1-{[(2Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(hydroxyimino)acetyl]amino}-2-oxoethyl]-5-({2-oxo-1-[(3R)-pyr+rolidin-3-yl]-2,5-dihydro-1H-pyrrol-3-yl}methyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic+acid'>RB6</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RB6:(2R)-2-[(1R)-1-{[(2Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(hydroxyimino)acetyl]amino}-2-oxoethyl]-5-({2-oxo-1-[(3R)-pyr+rolidin-3-yl]-2,5-dihydro-1H-pyrrol-3-yl}methyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic+acid'>RB6</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rcy OCA], [https://pdbe.org/7rcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rcy RCSB], [https://www.ebi.ac.uk/pdbsum/7rcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rcy ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rcy OCA], [https://pdbe.org/7rcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rcy RCSB], [https://www.ebi.ac.uk/pdbsum/7rcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rcy ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q18B08_CLOD6 Q18B08_CLOD6]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 19:
</div>
</div>
<div class="pdbe-citations 7rcy" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 7rcy" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Clostridioides difficile R20291]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chen, Y]]
+
[[Category: Chen Y]]
-
[[Category: Sacco, M]]
+
[[Category: Sacco M]]
-
[[Category: B-lactam]]
+
-
[[Category: Cell wall]]
+
-
[[Category: Gram-positive]]
+
-
[[Category: Pbp]]
+
-
[[Category: Pbp2]]
+
-
[[Category: Peptide binding protein]]
+
-
[[Category: Peptidoglycan]]
+
-
[[Category: Spore]]
+
-
[[Category: Sporulation]]
+
-
[[Category: Transpeptidase]]
+

Current revision

Crystal structure of C. difficile penicillin-binding protein 2 in complex with ceftobiprole

PDB ID 7rcy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools