7qlu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:55, 6 November 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Endothiapepsin apo at 100K==
==Endothiapepsin apo at 100K==
-
<StructureSection load='7qlu' size='340' side='right'caption='[[7qlu]]' scene=''>
+
<StructureSection load='7qlu' size='340' side='right'caption='[[7qlu]], [[Resolution|resolution]] 1.41&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QLU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7qlu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryphonectria_parasitica Cryphonectria parasitica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7QLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7QLU FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qlu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qlu OCA], [https://pdbe.org/7qlu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qlu RCSB], [https://www.ebi.ac.uk/pdbsum/7qlu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qlu ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.41&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PG5:1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE'>PG5</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7qlu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7qlu OCA], [https://pdbe.org/7qlu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7qlu RCSB], [https://www.ebi.ac.uk/pdbsum/7qlu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7qlu ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CARP_CRYPA CARP_CRYPA]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Continuous developments in cryogenic X-ray crystallography have provided most of our knowledge of 3D protein structures, which has recently been further augmented by revolutionary advances in cryoEM. However, a single structural conformation identified at cryogenic temperatures may introduce a fictitious structure as a result of cryogenic cooling artefacts, limiting the overview of inherent protein physiological dynamics, which play a critical role in the biological functions of proteins. Here, a room-temperature X-ray crystallographic method using temperature as a trigger to record movie-like structural snapshots has been developed. The method has been used to show how TL00150, a 175.15 Da fragment, undergoes binding-mode changes in endothiapepsin. A surprising fragment-binding discrepancy was observed between the cryo-cooled and physiological temperature structures, and multiple binding poses and their interplay with DMSO were captured. The observations here open up new promising prospects for structure determination and interpretation at physiological temperatures with implications for structure-based drug discovery.
 +
 +
Probing ligand binding of endothiapepsin by ;temperature-resolved' macromolecular crystallography.,Huang CY, Aumonier S, Engilberge S, Eris D, Smith KML, Leonarski F, Wojdyla JA, Beale JH, Buntschu D, Pauluhn A, Sharpe ME, Metz A, Olieric V, Wang M Acta Crystallogr D Struct Biol. 2022 Aug 1;78(Pt 8):964-974. doi: , 10.1107/S205979832200612X. Epub 2022 Jul 27. PMID:35916221<ref>PMID:35916221</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7qlu" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Cryphonectria parasitica]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Aumonier S]]
[[Category: Aumonier S]]
[[Category: Huang CY]]
[[Category: Huang CY]]
[[Category: Wang M]]
[[Category: Wang M]]

Current revision

Endothiapepsin apo at 100K

PDB ID 7qlu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools